Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M06
         (948 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    31   1.3  
11_06_0346 - 22549699-22549721,22549857-22549999,22550100-225521...    29   4.1  
04_03_0133 - 11653859-11653962,11658466-11658979                       29   7.1  

>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 283 HKGHESMHTXMVLILIGALVISQVVIVQWKKRHYRSYAFF----TXIAMWSIPVMIXFKN 450
           H G+ S    + ++L+   ++S V+++ W K  + ++ F     T  A++    +I F+ 
Sbjct: 358 HLGNASGLAVITVMLVTTCLMSLVIVLCWHKSIFLAFGFIIFFGTIEALYFSASLIKFRE 417

Query: 451 GWWRFVPIWSVFXLLTAL 504
           G W  VPI   F  +  +
Sbjct: 418 GAW--VPIVLAFIFMAIM 433


>11_06_0346 -
           22549699-22549721,22549857-22549999,22550100-22552175,
           22552305-22552822
          Length = 919

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 211 PNKTYQELTSEERLXYDHQKLHELHKGHESMHTXMVLILIGALVI---SQVVIVQW 369
           P K  +ELTS ERL   H K+ +L  G   +     L L G L+     Q+V ++W
Sbjct: 562 PEKV-KELTSLERLDISHTKISDLPSGVCRLPNLETLDLRGTLISQLPDQIVRIKW 616


>04_03_0133 - 11653859-11653962,11658466-11658979
          Length = 205

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 223 YQEL-TSEERLXYDHQKLHELHKGHESMHTXMVLILIG 333
           Y+EL TS ERL   H+KL E H    S      LI +G
Sbjct: 21  YEELKTSHERLTISHEKLKEAHDNLLSTTQHEALIDVG 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,733,871
Number of Sequences: 37544
Number of extensions: 228012
Number of successful extensions: 299
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)