Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M05
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   108   1e-24
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   108   1e-24
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    29   1.3  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  108 bits (260), Expect = 1e-24
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = +2

Query: 221 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 400
           YDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSL
Sbjct: 48  YDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107

Query: 401 EALKLVEKVQDGGRILTTQGRRDLDRI 481
           E + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 108 EKIGVLEKSDNGGRRISQQGQRDLDRI 134



 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = +1

Query: 88  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 228
           V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAP  P
Sbjct: 4   VSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  108 bits (260), Expect = 1e-24
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = +2

Query: 221 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 400
           YDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSL
Sbjct: 48  YDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107

Query: 401 EALKLVEKVQDGGRILTTQGRRDLDRI 481
           E + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 108 EKIGVLEKSDNGGRRISQQGQRDLDRI 134



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 23/47 (48%), Positives = 32/47 (68%)
 Frame = +1

Query: 88  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 228
           V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAP  P
Sbjct: 4   VSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 64  QHKARCVPVTVKDV-EQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 198
           QH  R VP+  + + E   I K  AA+   T  +K PE +DL+  A
Sbjct: 795 QHGCRAVPLDGRVLCEPTTISKATAANYIMTHLIKNPEELDLILVA 840


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,042
Number of Sequences: 5004
Number of extensions: 48401
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)