Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M04
         (984 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.25 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.76 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.8  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   5.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = +3

Query: 807 PXXPPSL--PXPVPXX-PXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXAL 956
           P  PP++  P P P   P P P  +        P P  AG   PPP P   A+
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
 Frame = +3

Query: 798 PXXPXXPPSLPXPVPXXPXPHPCXVCXLRXRAXPXP--------PWAGVXXPPPXPXXXA 953
           P     PP+   P P  P P P     +  +A P P        P A V  PP  P   +
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPS 192

Query: 954 LPXPVXP 974
              P+ P
Sbjct: 193 AVPPMPP 199


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +3

Query: 798 PXXPXXPPSLPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXP 965
           P  P  PPS P   P  P   P  +      A P PP A +  P P     A P P
Sbjct: 418 PTPPSLPPSAP---PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 24/108 (22%), Positives = 26/108 (24%), Gaps = 4/108 (3%)
 Frame = +3

Query: 657  PPXQPPXXRXPXXGRGXG----PXPDXXXPXPXPRXXGXXXXXXXXXXXXXPXXPXXPPS 824
            PP   P    P      G    P P    P P P                 P     PP 
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123

Query: 825  LPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXPV 968
                V   P P P     +   +   PP       PP P       PV
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/68 (25%), Positives = 19/68 (27%)
 Frame = +3

Query: 657  PPXQPPXXRXPXXGRGXGPXPDXXXPXPXPRXXGXXXXXXXXXXXXXPXXPXXPPSLPXP 836
            PP + P    P  G    P P    P P P                 P      PS+  P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252

Query: 837  VPXXPXPH 860
                P PH
Sbjct: 1253 RSSVPSPH 1260



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
 Frame = +3

Query: 807  PXXPPSLPXPVPXXPXPHPCXVCXLRXR---AXPXPPWAGVXXPPPXPXXXALPXPVXPG 977
            P   P +P P    P P P        +   A P  P      P P P   A P PV  G
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138

Query: 978  S 980
            +
Sbjct: 1139 A 1139



 Score = 23.4 bits (48), Expect(2) = 2.2
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = +3

Query: 816  PPSLPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXPV 968
            PPS P   P    P          R  P P  +    P P P   A P PV
Sbjct: 991  PPSAPLSKPVSTSPAAPLA-----RVPPVPKLSSKAPPVPLPSADAPPIPV 1036



 Score = 22.6 bits (46), Expect(2) = 2.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 807 PXXPPSLPXPVP 842
           P  PPS+P P+P
Sbjct: 963 PAAPPSIPPPLP 974


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 66  KRNQ*IXKKKXKKKEKXKXKXKKKK 140
           +R +   K+K +KKEK + K KKKK
Sbjct: 448 RRKKEAKKEKKEKKEKKEKKEKKKK 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,254
Number of Sequences: 5004
Number of extensions: 13393
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)