Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_M04
(984 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 41 0.002
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 41 0.002
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 41 0.002
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 38 0.014
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.077
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.077
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 32 0.54
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.72
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.72
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.72
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 1.3
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.2
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.9
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 3.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 3.8
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 3.8
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 40.7 bits (91), Expect = 0.002
Identities = 29/97 (29%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Frame = +3
Query: 657 PPXQPPXXRXPXXGRGXGPXPDXXXPXPXPRXXGXXXXXXXXXXXXXPXXPXXPPSLPXP 836
PP PP P G G P P P PR G P PP
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR-TGSPPPPPTGSPPPPPAGGSPPPPRAGS 296
Query: 837 VPXXPXPH--PCXVCXLRXRAXPXPPWAGVXXPPPXP 941
P P P P +A PP AG PPP P
Sbjct: 297 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 40.7 bits (91), Expect = 0.002
Identities = 29/97 (29%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Frame = +3
Query: 657 PPXQPPXXRXPXXGRGXGPXPDXXXPXPXPRXXGXXXXXXXXXXXXXPXXPXXPPSLPXP 836
PP PP P G G P P P PR G P PP
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR-TGSPPPPPTGSPPPPPAGGSPPPPRAGS 317
Query: 837 VPXXPXPH--PCXVCXLRXRAXPXPPWAGVXXPPPXP 941
P P P P +A PP AG PPP P
Sbjct: 318 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 40.7 bits (91), Expect = 0.002
Identities = 29/97 (29%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Frame = +3
Query: 657 PPXQPPXXRXPXXGRGXGPXPDXXXPXPXPRXXGXXXXXXXXXXXXXPXXPXXPPSLPXP 836
PP PP P G G P P P PR G P PP
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR-TGSPPPPPTGSPPPPPAGGSPPPPRAGS 302
Query: 837 VPXXPXPH--PCXVCXLRXRAXPXPPWAGVXXPPPXP 941
P P P P +A PP AG PPP P
Sbjct: 303 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 37.5 bits (83), Expect = 0.014
Identities = 27/106 (25%), Positives = 29/106 (27%)
Frame = +3
Query: 657 PPXQPPXXRXPXXGRGXGPXPDXXXPXPXPRXXGXXXXXXXXXXXXXPXXPXXPPSLPXP 836
PP P P P P P P P P P PP P P
Sbjct: 98 PPAPYPQHAVPAPAPPPAPYPQHAVPAPAP-------------YQQQPPPPPPPPHYPPP 144
Query: 837 VPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXPVXP 974
P P P P + P P + PPP P P P
Sbjct: 145 PPHYPPPPPAPHSAYIDHSAPRPAYIEHSAPPPQPQYPQQQPPQYP 190
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.1 bits (77), Expect = 0.077
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +3
Query: 816 PPSLPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXP 965
PP P P P P P P PP +G+ PPP P P P
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP 310
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.077
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +3
Query: 816 PPSLPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXP 965
PP P P P P P P PP +G+ PPP P P P
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP 320
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 32.3 bits (70), Expect = 0.54
Identities = 19/59 (32%), Positives = 21/59 (35%)
Frame = +3
Query: 798 PXXPXXPPSLPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXPVXP 974
P P +P PV P P P C P PP PPP P +P P P
Sbjct: 40 PCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPP----MPRPSCP 94
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 807 PXXPPSLPXPVPXXPXPHPCXVCXLR 884
P PP +P P P P P P C ++
Sbjct: 73 PPPPPPMPCPPPPPPMPRPSCPCMMQ 98
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.72
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +3
Query: 798 PXXPXXPPSLPXPVPXXPXPHPCXVCXLRXRAXPXPP--WAGVXXPPPXPXXXALPXPVX 971
P P P LP P+ P P P P PP + G PPP P A PV
Sbjct: 742 PPPPPPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVI 800
Query: 972 P 974
P
Sbjct: 801 P 801
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.72
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +3
Query: 798 PXXPXXPPSLPXPVPXXPXPHPCXVCXLRXRAXPXPP--WAGVXXPPPXPXXXALPXPVX 971
P P P LP P+ P P P P PP + G PPP P A PV
Sbjct: 742 PPPPPPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVI 800
Query: 972 P 974
P
Sbjct: 801 P 801
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.72
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +3
Query: 798 PXXPXXPPSLPXPVPXXPXPHPCXVCXLRXRAXPXPP--WAGVXXPPPXPXXXALPXPVX 971
P P P LP P+ P P P P PP + G PPP P A PV
Sbjct: 325 PPPPPPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVI 383
Query: 972 P 974
P
Sbjct: 384 P 384
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.1 bits (67), Expect = 1.3
Identities = 26/99 (26%), Positives = 28/99 (28%), Gaps = 4/99 (4%)
Frame = +3
Query: 657 PPXQPPXXRXPXXGRGXGPXPDXXXPXPXP----RXXGXXXXXXXXXXXXXPXXPXXPPS 824
PP PP P + D P P P P P PP
Sbjct: 508 PPTPPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPP 567
Query: 825 LPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXP 941
LP + P P P P PP G PPP P
Sbjct: 568 LPQNLSGAPPPPP-----------PPPPMLGGPPPPPPP 595
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +3
Query: 807 PXXPPSLPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXPVXP 974
P P +P P P P P P C P P A PPP P P P P
Sbjct: 78 PSCCPYVP-PAPLPPPPPPASPC-----CGPSPVPAPCCPPPPAPAAPCCPPPPPP 127
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +3
Query: 798 PXXPXXPPSLPX-PVPXXPXPHPCXVCXLRXRAXPXPPWAGVXX--PPPXPXXXALPXPV 968
P P PP P PV P P + P P A V PPP P P PV
Sbjct: 177 PPPPRPPPQEPPKPVEQAAPPPPPAPMPVPVEKAPEPVPAPVEQIAPPPAPVQDPAPAPV 236
Query: 969 XP 974
P
Sbjct: 237 EP 238
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +3
Query: 807 PXXPPSLPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXP 965
P P +P PV P P P V + PP A V P P P + P P
Sbjct: 197 PPPPAPMPVPVEKAPEPVPAPVEQI------APPPAPVQDPAPAPVEPSDPAP 243
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +3
Query: 798 PXXPXXPPSLPXPVPXX-PXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXP 965
P P P P +P P P P V P PP A PP P P P
Sbjct: 467 PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPP 523
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 717 PDXXXPXPXPRXXGXXXXXXXXXXXXXPXXPXXPPSLPXPVPXXPXPHP 863
PD P P PR G P P P P P PHP
Sbjct: 55 PDPSSPPPAPRPSGQPPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHP 103
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +3
Query: 798 PXXPXXPPSLPXPVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXPVXP 974
P PP LP P P P C P PP PPP P P P P
Sbjct: 34 PPPMCAPPPLPCPPPPICPPQFC----------PPPPMCPPPPPPPPPPMCPPPPPPMP 82
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/75 (28%), Positives = 25/75 (33%)
Frame = +3
Query: 711 PXPDXXXPXPXPRXXGXXXXXXXXXXXXXPXXPXXPPSLPXPVPXXPXPHPCXVCXLRXR 890
P P+ P P P G P PP +P P+ P P +
Sbjct: 660 PPPNIQPPVPHPPPMGFPFQHQLTQLPGQPRPAGLPPGVP-PMFNLNAPPPPGI----PG 714
Query: 891 AXPXPPWAGVXXPPP 935
P PP GV PPP
Sbjct: 715 YPPAPPPPGVGPPPP 729
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = +3
Query: 864 CXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXPVXP 974
C C + P PP PPP P +P P P
Sbjct: 232 CGGCNMGCSCLPPPPSPVCMPPPPPPCPMPIPCPPPP 268
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +3
Query: 798 PXXPXXPPSLPXPVPXX-PXPHPCXVCXLRXRAXPXPPWAGV-XXPPPXPXXXAL 956
P P P P +P P P P V P PP A PPP P AL
Sbjct: 460 PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPAL 514
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Frame = +3
Query: 816 PPSLPX---PVPXXPXPHPCXVCXLRXRAXPXPPWAGVXXPPPXPXXXALPXPVXP 974
PP +P P P P P P PP G PPP P A P P P
Sbjct: 66 PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMG-GIPPPPPMFGAPPPPPPP 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,047,062
Number of Sequences: 27780
Number of extensions: 127399
Number of successful extensions: 727
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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