Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_M03
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 35 0.019
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 33 0.058
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.31
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.54
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.72
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.72
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.95
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 2.2
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 3.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.1
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.7 bits (76), Expect = 0.019
Identities = 25/83 (30%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Frame = +1
Query: 370 PXPPXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPPSXKPXPXGP--PXGGGGX 543
P P P P G K A PP V P G PP KP P P G
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPP-----VPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Query: 544 PPXXGGXXVPPXPGXXXXKPXKP 612
P PP P P P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVP 1182
Score = 34.3 bits (75), Expect = 0.025
Identities = 32/100 (32%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
Frame = +1
Query: 370 PXPPXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPPSXKPXPXGP--PXGGGGX 543
P P P P G K A PP V P G PP KP P P G
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPP-----VPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 544 PP-XXGGXXVPPXPGXXXXKP-XKP--GGPXGPXXXXKXP 651
PP VPP P P KP G P P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 34.3 bits (75), Expect = 0.025
Identities = 26/95 (27%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Frame = +1
Query: 370 PXPPXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPPSXKPXPXGPPXGGGGXP- 546
P P P P G K A PP P P P+ P PP P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202
Query: 547 PXXGGXXVPPXPGXXXXKPXKPGGPXGPXXXXKXP 651
P G VPP G P P K P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 32.3 bits (70), Expect = 0.10
Identities = 27/103 (26%), Positives = 27/103 (26%), Gaps = 1/103 (0%)
Frame = +1
Query: 346 PPXXXXXPPXP-PXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPPSXKPXPXGP 522
P P P P P P G K A PP V P P PS P P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Query: 523 PXGGGGXPPXXGGXXVPPXPGXXXXKPXKPGGPXGPXXXXKXP 651
P G VP P G P P P
Sbjct: 1127 SVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169
Score = 30.3 bits (65), Expect = 0.41
Identities = 25/96 (26%), Positives = 26/96 (27%), Gaps = 1/96 (1%)
Frame = +1
Query: 346 PPXXXXXPPXP-PXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPPSXKPXPXGP 522
P PP P P P P + PP V P P PS P
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV-- 1181
Query: 523 PXGGGGXPPXXGGXXVPPXPGXXXXKPXKPGGPXGP 630
P G PP PP P P P P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 27.9 bits (59), Expect = 2.2
Identities = 24/97 (24%), Positives = 26/97 (26%), Gaps = 2/97 (2%)
Frame = +1
Query: 367 PPXP-PXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPPSXKPXPXGPPXGGGGX 543
PP P P P+ G + PP V P P PS P P G
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123
Query: 544 P-PXXGGXXVPPXPGXXXXKPXKPGGPXGPXXXXKXP 651
P P VP G P P P
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 33.1 bits (72), Expect = 0.058
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = +1
Query: 397 APGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPPSXKP 507
AP G G G G TA PPP G G PPP +P
Sbjct: 113 APVGLAGPVRGVGYTAPPPPAG---FGRGAPPPGFRP 146
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/56 (26%), Positives = 18/56 (32%)
Frame = +1
Query: 448 PPPXGXXVXGPXGPPPSXKPXPXGPPXGGGGXPPXXGGXXVPPXPGXXXXKPXKPG 615
P G + GP P+ + P G G P G PP P PG
Sbjct: 88 PSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPPG 143
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.31
Identities = 30/121 (24%), Positives = 33/121 (27%), Gaps = 10/121 (8%)
Frame = +1
Query: 298 PPXKXXXXRXXXXXXXPPXXXXXPPXPPXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXG 477
PP PP PP PP P+ G + PP + G
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 478 PXGP--PP-------SXKPXPXGPPXGGGGXPPXXGGXXVPPXP-GXXXXKPXKPGGPXG 627
P PP S P P PP PP P P G P P P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPT-PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456
Query: 628 P 630
P
Sbjct: 457 P 457
Score = 29.9 bits (64), Expect = 0.54
Identities = 21/72 (29%), Positives = 22/72 (30%)
Frame = +1
Query: 367 PPXPPXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPPSXKPXPXGPPXGGGGXP 546
PP PP A G G+ PPP G PP S PP P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP----APP 392
Query: 547 PXXGGXXVPPXP 582
P G P P
Sbjct: 393 PAIPGRSAPALP 404
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/68 (25%), Positives = 17/68 (25%), Gaps = 1/68 (1%)
Frame = +1
Query: 349 PXXXXXPPXPPXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPP-SXKPXPXGPP 525
P PP PP P PPP V P PP P P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPA 283
Query: 526 XGGGGXPP 549
PP
Sbjct: 284 INSTSKPP 291
Score = 25.8 bits (54), Expect = 8.8
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 6/78 (7%)
Frame = +1
Query: 367 PPXPPXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXG----PXGPPPSXKPXPXGPPXGG 534
PP P P G G PPP P G P P P G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 535 GGXPPXXGGXXV--PPXP 582
PP V PP P
Sbjct: 374 RQPPPLSSSRAVSNPPAP 391
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.54
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 567 PXSPXXGGXPPPPXXGAXGXGFXGRGXPPGP 475
P +P GG PPPP G G G PP P
Sbjct: 753 PPAPIMGGPPPPPPP----PGVAGAGPPPPP 779
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +1
Query: 346 PPXXXXXPPXPPXFXXPAPGGGGGXXXGKGXTAXPPPXGXXVXGPXGPPP 495
PP P P P P G G PPP G GP PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMG-----GPPPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/58 (36%), Positives = 21/58 (36%)
Frame = +1
Query: 448 PPPXGXXVXGPXGPPPSXKPXPXGPPXGGGGXPPXXGGXXVPPXPGXXXXKPXKPGGP 621
PPP V P P P P P P GG PP PP PG P P P
Sbjct: 734 PPPPAVIVPTP-APAPI--PVPPPAPIMGGPPPP-------PPPPGVAGAGPPPPPPP 781
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.72
Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Frame = +1
Query: 427 GKGXTAXPPPXGXXVXGPXG---PPPSXKPXPXGPPXGGGGXPPXXGGXXVPPXPGXXXX 597
GK + PP P PP S P P PP PP PP P
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPS--KAPPIPS-SLP 172
Query: 598 KPXKPGGP 621
P +P P
Sbjct: 173 PPAQPAAP 180
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.5 bits (63), Expect = 0.72
Identities = 19/70 (27%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Frame = +1
Query: 448 PPPXGXXVXGPXGPPPSXKPXPXGPPXGGGGXPPXXGGXXVPPXPGXXXXKPXK--PGGP 621
PPP GP P+ P GPP G G P G P P P
Sbjct: 1885 PPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAP 1944
Query: 622 XGPXXXXKXP 651
K P
Sbjct: 1945 PSVASNAKLP 1954
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.95
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 448 PPPXGXXVXGPXGPPPSXKPXPXGPPXGGGGXPPXXGGXXVP--PXPG 585
PPP V PPPS P P GPP PP P P PG
Sbjct: 1707 PPPPPMSVP----PPPSAPPMPAGPP---SAPPPPLPASSAPSVPNPG 1747
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +1
Query: 439 TAXPPPXGXXVXGPXGPPPSXKPXPXGPPXGGGGXPPXXGGXXVPPXPGXXXXKPXKPGG 618
T PPP + P P P P G PP G VPP P P
Sbjct: 906 TLPPPPPTASMTA--SAPAIASPPP--PKVGETYHPPTASGTRVPPVQQPSHPNPYTPVA 961
Query: 619 PXGP 630
P P
Sbjct: 962 PQSP 965
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 430 KGXTAXPPPXGXXVXGPXGPPPS 498
+G T PPP P GPPPS
Sbjct: 43 RGLTIPPPPSVDHSAPPSGPPPS 65
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 402 GGGGGXXXGXRGNGXPPPXGXXGFXAXG 485
GGG G G G P P G GF G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFG 214
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 390 FXXPGGGGGXXXGXRGNGXPPPXGXXGFXAXG 485
F G GG G G PP G GF G
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFG 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.152 0.529
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,877
Number of Sequences: 5004
Number of extensions: 27046
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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