Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M02
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763...    29   3.8  
06_01_0862 + 6533161-6533361,6533919-6534155                           29   5.1  

>03_04_0123 +
           17475020-17475243,17475367-17475445,17476295-17476393,
           17476499-17476682,17477139-17477206,17477530-17477787,
           17477996-17478049,17478149-17478355,17478507-17478633,
           17479409-17479575
          Length = 488

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 306 LLSAFEQRPLQS-KVVSFLRQSQCGFQGIRTKSLLWAFTGATREADYATFKNNAASDQCG 482
           L   ++ R +Q+ ++   + QSQ   QG + +S +  FTGA   A +   + ++ S    
Sbjct: 335 LSQQYQNRQMQAGRMQPGMSQSQLN-QGNQLRSHISQFTGAANSAMFTAAQASSNSQMMA 393

Query: 483 RPRSTPQCQKTRPRLLGIN 539
               + Q Q   P++ G+N
Sbjct: 394 NIPGSMQSQSLLPQMQGLN 412


>06_01_0862 + 6533161-6533361,6533919-6534155
          Length = 145

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 305 TVVCLRATALTKQSGQLPETITMWFSGXTYQEFVVGLYRRN 427
           TV  ++ T +T +SG   ++I+  +SG   QE VVG +  N
Sbjct: 21  TVTPIKLTGMTIRSGNAIDSISFSYSGIDGQEHVVGPWGGN 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,015,280
Number of Sequences: 37544
Number of extensions: 374087
Number of successful extensions: 863
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)