Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L24
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   2.8  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    27   3.7  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   8.6  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -2

Query: 419 EWNFALKTSSL-YKIGRISLTTRLGRAYLGSVIGGKALYTS--NQQGSVIRFHCSSAKKT 249
           E NF L TS     +  ++ T R     L SV     +Y++  N+   + RF+CSS+   
Sbjct: 361 ELNFHLDTSGFPITVEGVNGTGRFILFNLSSVANDSTVYSNRPNRIAEIGRFNCSSSGCD 420

Query: 248 FNSGKYCTNSFQSAT 204
           + +   C +S+ + +
Sbjct: 421 YATNVTCPDSYTAVS 435


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 386 YKIGRISLTTRLGRAYLGSVIGGKALYTSNQQGSVIRFHCSSA 258
           Y    I  +  LGR+    +IG  + +TSN +G +  F  S+A
Sbjct: 391 YSASLIEFSNFLGRSSDKVIIGYDSFHTSNNRGCLALFDASTA 433


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 338 LGSVIGGKALYTS--NQQGSVIRFHCSSAKKTFNSGKYCTNSFQSAT 204
           L SV     +Y++  N+   + RF+CSS+   + +   C NS+ + +
Sbjct: 309 LSSVANDSTVYSNRPNRIAEIGRFNCSSSGCDYATNVTCPNSYTAVS 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,640
Number of Sequences: 5004
Number of extensions: 66088
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)