Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L24
         (915 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437...    34   0.14 
11_04_0367 - 16840732-16843428,16844425-16844760                       31   1.3  
02_02_0667 + 12765759-12765787,12766644-12766732,12766967-127670...    30   2.2  
07_01_0355 + 2597592-2598280,2599150-2599426                           29   5.2  
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334...    24   7.6  
08_01_1032 + 10447474-10448030,10448784-10449813                       28   9.0  

>04_04_0190 -
           23442824-23442846,23442891-23442949,23443613-23443737,
           23443767-23443901,23444195-23444301,23444488-23444566,
           23444856-23444942,23445045-23445281,23445783-23446128,
           23446486-23446694
          Length = 468

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -2

Query: 350 GRAYLGSVIGGKALYTSNQQGSVIRFHCSSAKKTFNSGKYCTNSFQSATGHVKKFFLKLL 171
           G   LG  +   + + SN  GS +  HCS   + F S  +CT +  S    +  F L+  
Sbjct: 41  GWPLLGETLRFLSPHASNTLGSFLEDHCSRYGRVFKSHLFCTPTIVSCDQELNHFILQNE 100

Query: 170 ARLIYVS 150
            RL   S
Sbjct: 101 ERLFQCS 107


>11_04_0367 - 16840732-16843428,16844425-16844760
          Length = 1010

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +1

Query: 403 RAKFHSNGYGLAPVSLLNQSNETQTK--RLVQQYDELKAE----GIPEDEIIEKAAQAV- 561
           R +   NG  L+ V L+  SNE  TK   L+Q++DE+K       I +++ + + A  + 
Sbjct: 108 RKRHQVNGEHLSEVGLVPVSNELATKARELIQRFDEMKVYYKYFSISDNDGVRRTAPGIE 167

Query: 562 AVERHSYAAQKLNVTPKNPD 621
            V   SY   K ++  +  D
Sbjct: 168 CVRPTSYFVVKESIVGRESD 187


>02_02_0667 +
           12765759-12765787,12766644-12766732,12766967-12767065,
           12769131-12769304,12769376-12769590,12769746-12769835,
           12770744-12770905
          Length = 285

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 239 GKYCTNSFQSATGHVKKFFLKLLARLIYV 153
           G  C  +F S  G+ +KFFLK+ A   YV
Sbjct: 71  GTVCNLNFSSLLGYREKFFLKIYAAAFYV 99


>07_01_0355 + 2597592-2598280,2599150-2599426
          Length = 321

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 277 GFIAPRLRRPSTLVNIV 227
           GFIA RLRRPSTL+ ++
Sbjct: 3   GFIAGRLRRPSTLLTVL 19


>11_06_0606 +
           25432471-25432517,25433098-25433173,25433272-25433448,
           25433576-25433653,25433749-25433853,25434042-25434108,
           25434219-25434280,25434371-25434510,25434717-25434843,
           25434917-25435031,25435220-25435308,25435699-25435782,
           25435961-25436737
          Length = 647

 Score = 23.8 bits (49), Expect(2) = 7.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 671 PTNKVLLYRINTQPKLWCFITV 736
           P++++ ++  NT+  LW +I V
Sbjct: 178 PSDRISVWSFNTETDLWSYIEV 199



 Score = 23.0 bits (47), Expect(2) = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 746 KKLXKINVSHLKXITWALLDYVG 814
           KKL  +++  LK  TW  L+Y G
Sbjct: 230 KKLHDLHMFDLKSSTWLPLNYKG 252


>08_01_1032 + 10447474-10448030,10448784-10449813
          Length = 528

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 478 KRLVQQYDELKAEGIPEDEIIEKAAQA--VAVERHSYAAQKLNVTPK 612
           +R ++ YDE+K  G   D  +EK  +   +A   H   A K N+ P+
Sbjct: 470 QRALEYYDEMKENGFASDPKLEKEFRTFLLANRDHWRGAGKYNIIPQ 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,337,549
Number of Sequences: 37544
Number of extensions: 355072
Number of successful extensions: 748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)