Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L23
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    33   0.074
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    31   0.17 
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    30   0.52 
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   2.8  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   4.9  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   6.4  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    26   6.4  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 32.7 bits (71), Expect = 0.074
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 529 FSSPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSA 678
           FSS  P +A  +   Y    +G ++M NR+P  L+ I   YN+  +I SA
Sbjct: 32  FSSA-PVVATIIISYYLLILVGGRIMRNRQPIRLQKIFQYYNLTFSIASA 80


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 185 ITELKQYILGKTSVSYFITYISHQEIGSYSNRRF 286
           +  LK Y+ G T++ +F+TY  +  IG +  + F
Sbjct: 211 MNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQGF 244


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 535 SPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFS 675
           S W ++   +   Y     G  +M NRKP + R +  ++N   TI S
Sbjct: 53  SQWSSVIVSITAYYVIILSGRAIMTNRKPLKQRRLFQLHNFILTIIS 99


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 227 LHWFSLRYIASIQLYYHVGQSYFXK**LTIYAIYQIYKTTN 105
           LHW  L Y+ S   +Y  G+S         Y +  IY+T N
Sbjct: 331 LHWTELEYVVSTICFYPDGESIVVG---MFYGLCAIYETKN 368


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 568 YAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSAWI 684
           +A  A    P   + +  F L+NI+V+ N    ++ AWI
Sbjct: 12  FAVFASSDKPNNCSRKNMFFLKNIIVLSNYLYLLYKAWI 50


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 541 TAMKIIG--QSFTRGSPLLSIKSLYQLETVAIFVSYHQLLYRTI*YHRKTG 395
           T M ++   + +TR S  L+  S+Y +  +A+ + Y     RTI   RKTG
Sbjct: 386 TQMSVLSMWEIYTRDSSALAFLSMYVIVDMAVLLCY--AFVRTIQIIRKTG 434


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 670 FSAWIFYEYLMSGWWGHYDFRCQL 741
           F+ +IFYEYL    W  ++  C L
Sbjct: 4   FNDYIFYEYLKKTNWNIHNLYCNL 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,012
Number of Sequences: 5004
Number of extensions: 65937
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)