Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L23
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137...    31   1.7  
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136...    30   2.9  
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837     29   5.1  
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515     29   6.7  
12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744...    28   8.9  
07_01_0441 + 3345616-3346149                                           28   8.9  
04_01_0136 + 1522008-1522179,1522528-1522608,1522646-1523174,152...    28   8.9  

>06_01_0175 -
           1371089-1371706,1371812-1371994,1372069-1372324,
           1372407-1372976,1373423-1373529,1373664-1374136,
           1374279-1374372
          Length = 766

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 640 LVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMXMANT 786
           +++ N+  TIF+   + E L   WWG   F C +  +   P+ +  A T
Sbjct: 451 ILIANIGTTIFACEYYNEELQLPWWGVL-FACSIAFFFTLPIGIIKATT 498


>06_01_0173 -
           1364219-1364836,1364941-1365123,1365215-1365470,
           1365551-1366120,1367066-1367178,1367344-1367816,
           1367906-1367984
          Length = 763

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 640 LVVYNMAQTIFSAWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMXMANT 786
           +++ N+A TIF+   + E L   WWG     C +  +   P+ +  A T
Sbjct: 448 ILIANIAVTIFACEYYIEQLQLPWWGVL-LACAIAFFFTLPIGIITATT 495


>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
          Length = 730

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -2

Query: 798 VPPTRVRHXHGHWTPRVIYQLTPKVIVAPPSAHQI 694
           V P       G+W+ R+++++   ++V PP+ H++
Sbjct: 313 VSPMAADVIRGYWSQRILWEIGGYLVVYPPTVHRM 347


>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
          Length = 785

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 768 GHWTPRVIYQLTPKVIVAPPSAHQ--ILVEYPGAEDSLSHVVNDENISKF--EWFS 613
           G+W  R+++++   V   PP+ ++   +  YP AE+   H VN   + KF  EW S
Sbjct: 378 GYWAQRILWEIGGYVAFYPPTIYRKDHIQAYPFAEEKDLH-VNVGRLIKFLNEWRS 432


>12_01_0811 -
           7440413-7440712,7441285-7441398,7441448-7441705,
           7441825-7441998,7442344-7442514,7442607-7442874,
           7443171-7443937,7444437-7445123
          Length = 912

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 676 AWIFYEYLMSGWWGHYDFRCQLVDYSRSPMAMXMANTCW 792
           +WIF   + S WW  +    Q  + S  PM    A  C+
Sbjct: 561 SWIFSRIVESIWWQAFTPHMQSANISSEPMPSSNAKKCY 599


>07_01_0441 + 3345616-3346149
          Length = 177

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 786 RVRHXHGHWTPRVIYQLTPKVIVAPPSAHQILVE 685
           RV    G   P ++Y+LTP+V+ A P   + +V+
Sbjct: 44  RVVAGGGDMGPVIVYELTPRVVHAQPEEFRAIVQ 77


>04_01_0136 +
           1522008-1522179,1522528-1522608,1522646-1523174,
           1523301-1523616,1523653-1523847
          Length = 430

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 394 RQSSCDIRLFYKVI-GGNLRRWRPSQVGIVI*WTA 495
           RQ   D+ L Y+++  GNL R    +  +V+ WTA
Sbjct: 226 RQKKSDLFLVYELVDNGNLHRHLHEEAAVVLPWTA 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,192,882
Number of Sequences: 37544
Number of extensions: 427633
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)