Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L22
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     27   3.6  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   4.8  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   6.3  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.3  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    26   8.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.4  

>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 446 CPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIV 598
           C  F +R    +++  A  +     + + +W VCT+   + T   YP  IV
Sbjct: 138 CFDFRVRHPHNYMVKFAKSLKFSSSTASIAWNVCTDAYKTYTMLKYPAHIV 188


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 422 RPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPV 589
           R   L +T  PFS++   RF I HA   +VR    A  W +  +  F    +P+ +
Sbjct: 434 RSILLVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
 Frame = +1

Query: 550 EPPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRAXYVGGATEF--LKWWXNYXX 723
           EPP+Q      S   RL    +RH +S L +     I R   V   T+    K W N+  
Sbjct: 135 EPPLQISLSTSSNGCRLAQRLLRHVVSSLPSGMPEAIERFGRVRAITKTPEKKQWINHV- 193

Query: 724 PKKKXFWXL 750
                FW L
Sbjct: 194 ---SDFWPL 199


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 477 RHASRREKGGQV---SGKRQGRNRRAHEGASR 391
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 744 PKXFFFRXXVVXPPLQEL 691
           PK FFF   V  PP+Q+L
Sbjct: 222 PKYFFFDDIVTLPPVQQL 239


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +1

Query: 316 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 444
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,803
Number of Sequences: 5004
Number of extensions: 66050
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)