Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_L18
(914 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 49 5e-08
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 25 1.3
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 23 3.9
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 3.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.8
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 6.8
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 49.2 bits (112), Expect = 5e-08
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Frame = +3
Query: 171 FLFLFITH*KPCCERNLET*GSRMGNAGLKQHYETASKTGVLQIADCKLKEIPIDVFSLC 350
FL L+ H + L T G+++ N + T S + I P+ F C
Sbjct: 379 FLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASID-------PL-AFRNC 430
Query: 351 DVLRNLDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPE-SLINLKKLEVLNISNNFV 527
L+ LDLS N+L+ +PD L L LK L+L N++ S NL +L L + N +
Sbjct: 431 SDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDI 490
Query: 528 QTLP-VCLKNLNNLKQVYASNNKLQAFPKQILGL-QSLDVLDLSHNKITEIPYGMSEL-Y 698
L L +L NL+ + + NK+Q + L+ + L N +++I + +
Sbjct: 491 GNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIAS 550
Query: 699 VIELNLSQNEI 731
++ LNLS+N I
Sbjct: 551 LLLLNLSENHI 561
Score = 45.6 bits (103), Expect = 6e-07
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Frame = +3
Query: 357 LRNLDLSKNKL-SVLPDDLSKLKHLKQLNLDSNKLQALPESLI-NLKKLEVLNISNNFVQ 530
L+ L L +N + + D L+ L L+ N N L +LPE L + + L ++++ N ++
Sbjct: 239 LQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLR 298
Query: 531 TLPVCL-KNLNNLKQVYASNNKL---QAFPKQILGLQSLDVLDLSHNKITEIPYGM-SEL 695
LP + L L + + N+L + LGL L VL+LS+N +T I M +L
Sbjct: 299 DLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDL 358
Query: 696 YVIE-LNLSQNEISLI 740
+ ++ L+L N I I
Sbjct: 359 FFLQILDLRNNSIDRI 374
Score = 40.3 bits (90), Expect = 2e-05
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = +3
Query: 447 SNKLQALPESLINLKKLEVLNISNNFVQTLPV-CLKNLNNLKQVYASNNKLQAFPKQILG 623
S L+ P+S + L++L L I + VQ LPV L +L+NL+ + + N+L+ +G
Sbjct: 133 SRFLELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDI--NDIG 190
Query: 624 LQSLDVLDLSHNKITEIPYGMSELYVIELNLSQNEISLIGEDLHQAPRLKILRLDE 791
L D D S + +++ + L+LS+NEI+ + E+ +P L + +L E
Sbjct: 191 LNRRDSDDGSDGNDGDESSCRADIRI--LDLSRNEITRLQEN---SPLLDLRQLQE 241
Score = 39.9 bits (89), Expect = 3e-05
Identities = 41/170 (24%), Positives = 86/170 (50%), Gaps = 24/170 (14%)
Frame = +3
Query: 294 LQIADCKLKEIPIDVFSLCDVLRNLDLSKNKLSVLPD-----------------DLSKLK 422
L+I + ++ +P++ D L+ L+L++N+L + D D S +
Sbjct: 152 LEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNRRDSDDGSDGNDGDESSCR 211
Query: 423 -HLKQLNLDSNKLQALPES--LINLKKLEVLNISNN-FVQTLPVCLKNLNNLKQVYASNN 590
++ L+L N++ L E+ L++L++L+ L++ N V+ L L L+ AS N
Sbjct: 212 ADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYN 271
Query: 591 KLQAFPKQIL-GLQSLDVLDLSHNKITEIPYGM-SEL-YVIELNLSQNEI 731
L + P+ + + L + L++N + ++P G+ + L ++ LNL+ N +
Sbjct: 272 SLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRL 321
Score = 38.7 bits (86), Expect = 7e-05
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Frame = +3
Query: 261 QHYETASKTGVLQIADCKLKEIPIDVFSLCDVLRNLDL--------SKNKLSVLPDDLSK 416
Q ++ + L + CK+ IP F L+ L + + L + PD
Sbjct: 86 QSWQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKLTVQTFNSVWGASRFLELAPDSFLG 145
Query: 417 LKHLKQLNLDSNKLQALP-ESLINLKKLEVLNISNNFVQTLPVCLKNLNNLKQVYASNNK 593
L+ L L + + +QALP SL +L L+ LN++ N ++ + N + N+
Sbjct: 146 LRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNRRDSDDGSDGNDG 205
Query: 594 LQAFPKQILGLQSLDVLDLSHNKITEIPYGMSEL---YVIELNLSQNEI-SLIGEDLHQA 761
++ + + +LDLS N+IT + L + EL+L +N I + G+ L
Sbjct: 206 DESSCR-----ADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGL 260
Query: 762 PRLKILRLDENCLSLDEIKPSCF 830
L+ N SLD + F
Sbjct: 261 TVLRTFNASYN--SLDSLPEGLF 281
Score = 37.9 bits (84), Expect = 1e-04
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 291 VLQIADCKLKEIPIDVFSLCDVLRNLDLSKNKLSVLPD-DLSKLKHLKQLNLDSNKLQAL 467
VL + ++ I F+ + L+ L L N++ L + +L HL++L L +N + +
Sbjct: 822 VLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFI 881
Query: 468 PE-SLINLKKLEVLNISNNFVQTLPVCLKNLN 560
+ + L+ LE+L +S N + T PV LN
Sbjct: 882 GNLTFLPLRSLEILRLSGNRLVTFPVWQVTLN 913
Score = 35.9 bits (79), Expect = 5e-04
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Frame = +3
Query: 357 LRNLDLSKNKLS-VLPDDLSKLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQT 533
L+ L+L++NK+ V + L+ + LD N L + ++ L +LN+S N ++
Sbjct: 504 LQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIEW 563
Query: 534 LPVCLKNLNNLKQVYASNNKLQAFPKQI-LGLQSLDVLDLSHNKITEI-PYGMSELYVIE 707
NLK + N +++ + + LD SHN+ITE+ P + + +
Sbjct: 564 FDYAFIP-GNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLSVPDSVEL- 621
Query: 708 LNLSQNEISLI 740
L ++ N I+L+
Sbjct: 622 LFINNNYINLV 632
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 24.6 bits (51), Expect = 1.3
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +3
Query: 471 ESLINLKKLEVLNISNNFVQTLPVCLKNLNNLKQVYASNNKLQAFPKQILGLQSLDVLDL 650
E +N K +++ V++ + + L LKQ Y N+KL+ K + L+ L ++DL
Sbjct: 316 EKFLNYLKRGGKTLTSISVESNTMFINILKFLKQKYVKNSKLEKVIKHDI-LRML-IIDL 373
Query: 651 SHNKITEIPYGMSELYVI 704
++ + +E+ +I
Sbjct: 374 RKKQLKSLEDWENEMNII 391
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 23.0 bits (47), Expect = 3.9
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +3
Query: 501 VLNISNNFVQTLPVCLKNLNNLKQVYASNNKLQAFP 608
+ ++SNN++ + N N K++Y + N ++ P
Sbjct: 82 ISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIP 117
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.0 bits (47), Expect = 3.9
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +3
Query: 501 VLNISNNFVQTLPVCLKNLNNLKQVYASNNKLQAFP 608
+ ++SNN++ + N N K++Y + N ++ P
Sbjct: 320 ISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIP 355
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 474 IQVKLE-VYYYLNLIVSGVLI 415
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 474 IQVKLE-VYYYLNLIVSGVLI 415
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 474 IQVKLE-VYYYLNLIVSGVLI 415
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 474 IQVKLE-VYYYLNLIVSGVLI 415
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 474 IQVKLE-VYYYLNLIVSGVLI 415
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 474 IQVKLE-VYYYLNLIVSGVLI 415
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 474 IQVKLE-VYYYLNLIVSGVLI 415
IQ++ +YY+ NLIV VLI
Sbjct: 256 IQIRRRTLYYFFNLIVPCVLI 276
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 474 IQVKLE-VYYYLNLIVSGVLI 415
IQ++ +YY+ NLIV VLI
Sbjct: 256 IQIRRRTLYYFFNLIVPCVLI 276
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 477 VIQVKLEVYYYLNLIVSGVLI 415
VI + +YY+ NLIV VLI
Sbjct: 225 VIIRRRTLYYFFNLIVPCVLI 245
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,910
Number of Sequences: 438
Number of extensions: 5324
Number of successful extensions: 26
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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