Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L17
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.21 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   0.34 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect(2) = 0.21
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +3

Query: 741 PPPPPXKXXPPPXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPPXPP 890
           PPPPP    P P                              PPPPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 867 PPPPPXPPXGGXPXPP 914
           P PPP P  GG P PP
Sbjct: 750 PVPPPAPIMGGPPPPP 765



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +3

Query: 867 PPPPPXPP--XGGXPXPP 914
           PPPPP PP   G  P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 867 PPPPPXPPXGGXPXPP 914
           PPPPP     G P PP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 21.0 bits (42), Expect(2) = 0.21
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 867 PPPPPXPPXGG 899
           PPPPP    GG
Sbjct: 779 PPPPPAVSAGG 789


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect(2) = 0.34
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 741  PPPPPXKXXPPPXA 782
            PPPPP    PPP A
Sbjct: 1707 PPPPPMSVPPPPSA 1720



 Score = 22.2 bits (45), Expect(2) = 0.34
 Identities = 9/17 (52%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
 Frame = +3

Query: 867  PPPPPXPP-XGGXPXPP 914
            PPPP  PP   G P  P
Sbjct: 1715 PPPPSAPPMPAGPPSAP 1731


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
 Frame = +3

Query: 867 PPPPPXP-PXGGXPXPP 914
           PPPPP P P    P PP
Sbjct: 6   PPPPPAPAPAAAAPAPP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,324
Number of Sequences: 5004
Number of extensions: 20505
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)