Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L16
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    61   2e-10
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    60   4e-10
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    54   3e-08
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    34   0.024
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   6.4  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    26   8.4  

>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
 Frame = +2

Query: 452 SRQKADPYVEKAKIYNYRCRSAFKLLEMNERTNILRPGLAVIDLGACPGSWTQVAVQK-- 625
           S+ K D Y   AK   +R RSAFKLL++NE+ N+      V+DL A PGSW+QV  ++  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLSRELL 64

Query: 626 TNADGADPSKPKGTVLSID 682
            N D +  +  K  ++++D
Sbjct: 65  KNIDTSIAADEKPMIVAVD 83


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 26/62 (41%), Positives = 41/62 (66%)
 Frame = +2

Query: 431 KSSQEWLSRQKADPYVEKAKIYNYRCRSAFKLLEMNERTNILRPGLAVIDLGACPGSWTQ 610
           K+   W +++  D Y +K+KI N+R R+A+KL+E+N +   +     VID+G  PGSW+Q
Sbjct: 5   KTLFSWAAKRSKDFYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVGFAPGSWSQ 64

Query: 611 VA 616
           VA
Sbjct: 65  VA 66


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 27/69 (39%), Positives = 42/69 (60%)
 Frame = +2

Query: 437 SQEWLSRQKADPYVEKAKIYNYRCRSAFKLLEMNERTNILRPGLAVIDLGACPGSWTQVA 616
           SQ+  ++ + D + + AK   YR R+AFKL+++N++ + L     +IDL A PG W QVA
Sbjct: 4   SQKKTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVA 63

Query: 617 VQKTNADGA 643
             KT   G+
Sbjct: 64  -SKTCKPGS 71


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 530 EMNERTNILRPGLAVIDLGACPGSWTQVAVQKTNADG 640
           ++N+   + +PG  V+DLG  PG W+ +A +     G
Sbjct: 65  KINKEHQLFKPGQIVVDLGCAPGIWSTIAARHVGLFG 101


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 873 DSHVQRPIILSLSIPGHLLHWSH 805
           D+ +QRP +   S     LHWSH
Sbjct: 170 DTFMQRPFLYPASSYNSALHWSH 192


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 903 LFFCHKXCKFDSHVQRPIILSLSIPGHLLHWSHVRETRST 784
           L +  K    +  +Q P +LSLS      +W+ V  T+++
Sbjct: 145 LHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKAS 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,606,789
Number of Sequences: 5004
Number of extensions: 75055
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)