Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L16
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    56   4e-08
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260...    55   9e-08
03_06_0493 + 34315867-34316124,34316194-34316256,34317346-343176...    42   7e-04
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    32   0.54 
03_04_0195 - 18356157-18356741                                         29   3.8  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    29   5.1  

>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 27/54 (50%), Positives = 35/54 (64%)
 Frame = +2

Query: 452 SRQKADPYVEKAKIYNYRCRSAFKLLEMNERTNILRPGLAVIDLGACPGSWTQV 613
           S+ K D Y  KAK   +R RSAFKLL++++  NI      V+DL A PGSW+QV
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQV 58


>05_07_0148 +
           28024820-28025293,28025655-28025702,28026034-28026080,
           28026334-28026496,28026595-28026656,28026820-28027003,
           28027093-28027182,28027553-28027686,28027747-28027936,
           28028103-28029033,28029860-28030065
          Length = 842

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 26/55 (47%), Positives = 34/55 (61%)
 Frame = +2

Query: 455 RQKADPYVEKAKIYNYRCRSAFKLLEMNERTNILRPGLAVIDLGACPGSWTQVAV 619
           +Q+ D +   AK   YR R+AFKLL+++ R   L    AV+DL A PG W QVAV
Sbjct: 7   KQRQDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAV 61


>03_06_0493 +
           34315867-34316124,34316194-34316256,34317346-34317604,
           34317710-34317819
          Length = 229

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 18/54 (33%), Positives = 32/54 (59%)
 Frame = +2

Query: 521 KLLEMNERTNILRPGLAVIDLGACPGSWTQVAVQKTNADGADPSKPKGTVLSID 682
           +L+++ ++  ++ PG AV+DLG  PG+W QVA Q        P +  G ++ +D
Sbjct: 57  QLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQNLG-----PLEKGGVIVGVD 105


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 335 DGITMLCSHREVTHIKLNYTRMCFLVNCLKR-FKSSQEWLSRQKA 466
           +GI  LCSH EV H  +    + + + C K+ + +  EW S  KA
Sbjct: 13  EGIETLCSHLEVPHTDVRILMLAWKMGCEKQGYFTLDEWRSGLKA 57


>03_04_0195 - 18356157-18356741
          Length = 194

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 785 VDLVSLTWLQ--CNRCPGMDKDKIMGLCTWL 871
           +D V L  L+  C RCP ++ D ++ LC WL
Sbjct: 100 MDCVPLWGLESICGRCPEIEDDYVVVLCGWL 130


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 416 CLKRFKSSQEWLSRQKADPYVEKA 487
           C+ R K ++ W+ R K +PY + A
Sbjct: 671 CMLRAKETESWMPRSKNEPYAQSA 694


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,983,593
Number of Sequences: 37544
Number of extensions: 434973
Number of successful extensions: 915
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)