Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L10
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   3.7  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   4.8  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    26   6.4  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 136 QWLIKERLKNAKMTSENLQSL 198
           QW+ K + +NA   +ENLQ L
Sbjct: 284 QWIAKRKAENANRAAENLQPL 304


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 314 YSLCTCEIFHVVI*KFCLLRWYIRFEPF 231
           YS+ +   F V++  FCL RW + +  F
Sbjct: 576 YSVISLVAFFVIVQIFCLARWNLGYNDF 603


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = +1

Query: 133 IQWLIKERLKNAKMTSENLQSLRS-----QRAKSTQSRNGSK 243
           ++ ++KE L   K  S +LQSL+S     Q+ ++  SR G K
Sbjct: 111 LEAVLKEELHQIKKFSSDLQSLKSSMGERQKQQAAMSRRGKK 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,303
Number of Sequences: 5004
Number of extensions: 51039
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)