Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L10
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         33   0.41 
04_04_0245 - 23872901-23872906,23873567-23873600,23874497-238747...    31   1.7  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
 Frame = -3

Query: 894 PQGXXXXXFXXP-NPXKXGPPGGXGXPXXFXGEXPPPQXXREKXPYPKXGRPRGEXP 727
           PQ      +  P  P    PP G   P       PPP         PK G P GE P
Sbjct: 531 PQAEPPTEYSPPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKSGPPAGESP 587



 Score = 31.5 bits (68), Expect = 0.95
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -3

Query: 861 PNPXKXGPPGGXGXPXXFXGEXPPPQXXREKXPYPKXGRPRGE 733
           P+P K GPP G   P       PPP    E  P P    P  E
Sbjct: 574 PSPPKSGPPAGESPPTPESKASPPP-TPEEYTPSPPKSTPPAE 615


>04_04_0245 -
           23872901-23872906,23873567-23873600,23874497-23874765,
           23876691-23876741
          Length = 119

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 206 NERRVRSREMAQSECTNEEDKISKSPRGIFHR 301
           NE+ V  R MA+ E  +E +  + SP G+ HR
Sbjct: 50  NEQEVDKRVMAKGELADERESTATSPEGMGHR 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,627,434
Number of Sequences: 37544
Number of extensions: 402276
Number of successful extensions: 876
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)