Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L10
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    33   0.005
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    33   0.005
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              24   1.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 450 LAHRDLLGPVEEFMQKHTMQVMSHFDSCGE-RWILAG 343
           L+H  L  PV+EF ++ T+Q+    ++ G  RW LAG
Sbjct: 175 LSHALLKDPVKEFWERRTLQISDGIENIGSIRWELAG 211


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 450 LAHRDLLGPVEEFMQKHTMQVMSHFDSCGE-RWILAG 343
           L+H  L  PV+EF ++ T+Q+    ++ G  RW LAG
Sbjct: 228 LSHALLKDPVKEFWERRTLQISDGIENIGSIRWELAG 264


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 155 LSFISHCMLNLPTYHKTTKPSFRISD 78
           LS +  C++  P+ H  T+PSF +SD
Sbjct: 7   LSLLITCLICSPSVHCGTRPSF-VSD 31


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 453 LLAHRDLLGPVEE 415
           +LAH DL+ P++E
Sbjct: 646 VLAHNDLMSPLDE 658


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,056
Number of Sequences: 438
Number of extensions: 4605
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)