Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L04
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.043
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 514 PPPPXXGGXXXGXPPPPPP 570
           PPPP  G    G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 514 PPPPXXGGXXXGXPPPPPP 570
           PPPP   G     PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 514 PPPPXXGGXXXGXPPPPPP 570
           PPPP   G     PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 514 PPPPXXGGXXXGXPPPPPP 570
           PPPP       G  PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 514 PPPPXXGGXXXGXPPPPPP 570
           PP P  GG     PPPPPP
Sbjct: 753 PPAPIMGGPP---PPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 514 PPPPXXGGXXXGXPPPPPP 570
           PPPP  G      PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 514 PPPPXXGGXXXGXPPPPPP 570
           PPPP   G      PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 514 PPPPXXGGXXXGXPPPPPP 570
           PPPP         PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 508 KNPPPPXXGGXXXGXPPPPPP 570
           +  PP   G      PPPPPP
Sbjct: 322 RGKPPIGNGSSNSSLPPPPPP 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,353
Number of Sequences: 5004
Number of extensions: 20174
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)