Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L03
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm rec...    30   1.9  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    29   3.4  
U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 33 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 729 VIWMFLILYFPLAWAALSFLCL 664
           V W+F +++F  AW+A  + CL
Sbjct: 135 VFWVFYVIFFGFAWSASVYFCL 156


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +3

Query: 150 FNKVFEY*VKTKNSDNITIMEIQLRRHRSAQI---QDQENLYAGVRGKGNGAVPT 305
           F  +F+Y      + N    E+Q R+H+  ++   QD +  Y G  G+  G VP+
Sbjct: 827 FVALFDYTAAMSPNPNAEFEELQFRKHQLIKVYGGQDIDGFYHGAIGQRVGLVPS 881


>U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical
           protein B0244.9 protein.
          Length = 180

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 701 FL*HGQLCLFCVLTFLSLYVDVN*FFYFIWLV 606
           F+  G  C   +LT LSL++    + YFIWLV
Sbjct: 51  FIMFGLSCFLVILT-LSLWIASTHYSYFIWLV 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,572,120
Number of Sequences: 27780
Number of extensions: 344880
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)