Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L01
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...    96   7e-21
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...    96   7e-21

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 95.9 bits (228), Expect = 7e-21
 Identities = 51/109 (46%), Positives = 60/109 (55%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A ++G   L +  V G    LNRLP A  G M  A VKK  P+LR  + PA V+RQ   +
Sbjct: 28  ADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAW 87

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 88  RRKDGVYLYFEDNAGVIVN-PKGEMKGSAITGPVAKECADLWPRIASNA 135


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 95.9 bits (228), Expect = 7e-21
 Identities = 51/109 (46%), Positives = 60/109 (55%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A ++G   L +  V G    LNRLP A  G M  A VKK  P+LR  + PA V+RQ   +
Sbjct: 28  ADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAW 87

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 88  RRKDGVYLYFEDNAGVIVN-PKGEMKGSAITGPVAKECADLWPRIASNA 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,503
Number of Sequences: 5004
Number of extensions: 20622
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)