Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L01
         (903 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55954-1|CAA39417.1|  140|Homo sapiens HL23 ribosomal protein pr...   108   2e-23
X52839-1|CAA37023.1|  140|Homo sapiens ribosomal protein L17 pro...   108   2e-23
BC106061-1|AAI06062.1|  140|Homo sapiens RPL23 protein protein.       108   2e-23
BC104651-1|AAI04652.1|  140|Homo sapiens ribosomal protein L23 p...   108   2e-23
BC062716-1|AAH62716.1|  140|Homo sapiens ribosomal protein L23 p...   108   2e-23
BC010114-1|AAH10114.1|  140|Homo sapiens ribosomal protein L23 p...   108   2e-23
BC003518-1|AAH03518.1|  134|Homo sapiens Similar to ribosomal pr...   108   2e-23
AB061827-1|BAB79465.1|  140|Homo sapiens ribosomal protein L23 p...   108   2e-23
BC034378-1|AAH34378.1|   77|Homo sapiens RPL23 protein protein.        49   3e-05

>X55954-1|CAA39417.1|  140|Homo sapiens HL23 ribosomal protein
           protein.
          Length = 140

 Score =  108 bits (260), Expect = 2e-23
 Identities = 58/109 (53%), Positives = 64/109 (58%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L +  V+GI G LNRLP AG G M  A VKK  PELR  V PA VIRQ   +
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSY 88

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 89  RRKDGVFLYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 136


>X52839-1|CAA37023.1|  140|Homo sapiens ribosomal protein L17
           protein.
          Length = 140

 Score =  108 bits (260), Expect = 2e-23
 Identities = 58/109 (53%), Positives = 64/109 (58%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L +  V+GI G LNRLP AG G M  A VKK  PELR  V PA VIRQ   +
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSY 88

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 89  RRKDGVFLYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 136


>BC106061-1|AAI06062.1|  140|Homo sapiens RPL23 protein protein.
          Length = 140

 Score =  108 bits (260), Expect = 2e-23
 Identities = 58/109 (53%), Positives = 64/109 (58%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L +  V+GI G LNRLP AG G M  A VKK  PELR  V PA VIRQ   +
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSY 88

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 89  RRKDGVFLYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 136


>BC104651-1|AAI04652.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  108 bits (260), Expect = 2e-23
 Identities = 58/109 (53%), Positives = 64/109 (58%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L +  V+GI G LNRLP AG G M  A VKK  PELR  V PA VIRQ   +
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSY 88

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 89  RRKDGVFLYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 136


>BC062716-1|AAH62716.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  108 bits (260), Expect = 2e-23
 Identities = 58/109 (53%), Positives = 64/109 (58%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L +  V+GI G LNRLP AG G M  A VKK  PELR  V PA VIRQ   +
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIRQRKSY 88

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 89  RRKDGVFLYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 136


>BC010114-1|AAH10114.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  108 bits (260), Expect = 2e-23
 Identities = 58/109 (53%), Positives = 64/109 (58%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L +  V+GI G LNRLP AG G M  A VKK  PELR  V PA VIRQ   +
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSY 88

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 89  RRKDGVFLYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 136


>BC003518-1|AAH03518.1|  134|Homo sapiens Similar to ribosomal
           protein L23 protein.
          Length = 134

 Score =  108 bits (260), Expect = 2e-23
 Identities = 58/109 (53%), Positives = 64/109 (58%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L +  V+GI G LNRLP AG G M  A VKK  PELR  V PA VIRQ   +
Sbjct: 23  ADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSY 82

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 83  RRKDGVFLYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 130


>AB061827-1|BAB79465.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  108 bits (260), Expect = 2e-23
 Identities = 58/109 (53%), Positives = 64/109 (58%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L +  V+GI G LNRLP AG G M  A VKK  PELR  V PA VIRQ   +
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSY 88

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  +YFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 89  RRKDGVFLYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 136


>BC034378-1|AAH34378.1|   77|Homo sapiens RPL23 protein protein.
          Length = 77

 Score = 48.8 bits (111), Expect = 3e-05
 Identities = 25/45 (55%), Positives = 28/45 (62%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELR 337
           A +TG   L +  V+GI G LNRLP AG G M  A VKK  PELR
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,967,462
Number of Sequences: 237096
Number of extensions: 904259
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)