Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_L01
         (903 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   113   2e-25
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   104   2e-22

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  113 bits (273), Expect = 2e-25
 Identities = 62/109 (56%), Positives = 64/109 (58%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L V  V GI G LNRLP AG G M  A VKK  PELR  V PA VIRQ  PF
Sbjct: 29  ADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPF 88

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  IYFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 89  RRRDGVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 136


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  104 bits (249), Expect = 2e-22
 Identities = 58/109 (53%), Positives = 60/109 (55%)
 Frame = -1

Query: 471 ARDTGXXXLXVXXVQGIXGXLNRLPPAGSGXMXXAXVKKXXPELRXXVXPAXVIRQXXPF 292
           A +TG   L V  V GI G LNRLP AG G M  A VKK  PELR  V      RQ  PF
Sbjct: 29  ADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVSVVPSARQRKPF 88

Query: 291 XRXXGXXIYFEDXXGVIXNKARAXXXXRPSTGPVAKECADXWPRXASQA 145
            R  G  IYFED  GVI N  +        TGPVAKECAD WPR AS A
Sbjct: 89  RRRDGVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKECADLWPRIASNA 136


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,484,655
Number of Sequences: 53049
Number of extensions: 265939
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4403028645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)