Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_K24
(991 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 34 0.036
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 1.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 4.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 4.1
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 5.4
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 5.4
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 5.4
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 7.1
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 9.4
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 9.4
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 33.9 bits (74), Expect = 0.036
Identities = 30/123 (24%), Positives = 53/123 (43%)
Frame = +1
Query: 94 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 273
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 274 TEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 453
+KS+ D + +S + T T NP +++ + N L + + H
Sbjct: 82 NITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLNSSPPNSLSSQPKHQEFHLFH 140
Query: 454 TTT 462
T T
Sbjct: 141 TPT 143
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.8
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +1
Query: 160 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 318
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 319 DSSQ 330
SSQ
Sbjct: 488 SSSQ 491
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +3
Query: 435 QDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVRKEPSHKESEQN 614
++S E ES + + S E + ++P++ S +E+ +E ESE++
Sbjct: 40 EESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEED 99
Query: 615 RD 620
+
Sbjct: 100 SE 101
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 262 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 441
EDV E+ + + E D + ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
Query: 442 QM 447
+
Sbjct: 308 NL 309
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 278 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 147
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 385 RQRLCPEAGSSPESRCASAGSNQTSQCRRIKTSGSSQ 275
+QR+ PE S PE+ + +N +++ + TS + Q
Sbjct: 235 QQRINPETSSVPETPVGVSAANVSNESTELATSATQQ 271
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 5.4
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +1
Query: 145 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 312
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66
Query: 313 KFDSSQLKHTETQEK 357
KF +S + +T EK
Sbjct: 67 KFHTSLNRFGKTLEK 81
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 7.1
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +1
Query: 229 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 408
D EK V S + E+ QK++ D E+ D + T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 409 LLDGVEHFDKT 441
++GV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +1
Query: 244 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 372
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 9.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 285 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 181
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,808
Number of Sequences: 5004
Number of extensions: 50616
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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