Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_K23
         (956 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    65   6e-11
U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    28   8.6  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    28   8.6  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 28/43 (65%), Positives = 37/43 (86%)
 Frame = +1

Query: 76  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 204
           M  R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK  +IP+
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPK 43



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 31/58 (53%), Positives = 35/58 (60%)
 Frame = +2

Query: 206 CGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 379
           C     KL GI PARP     L   ++TV R YGG L    VK+RI RAFL+EEQKIV
Sbjct: 44  CRDTGVKLHGITPARPIALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101


>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  P*DFGHQLSKSLKMVQRLTFRRRLSYNTK 123
           P +F H   +S +M +    RR++SYNTK
Sbjct: 57  PENFYHDFQQSAQMAEDANQRRQVSYNTK 85


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  P*DFGHQLSKSLKMVQRLTFRRRLSYNTK 123
           P +F H   +S +M +    RR++SYNTK
Sbjct: 57  PENFYHDFQQSAQMAEDANQRRQVSYNTK 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,195
Number of Sequences: 27780
Number of extensions: 222550
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)