Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_K22
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.048
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.064
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   2.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.048
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = +1

Query: 514 KKXPPPPPPXXGXGXXPPPXXKKXXGGGGGXXXFFFXPPPPXXXXGGGXXP 666
           KK PPPPPP        PP       G G        PPPP      G  P
Sbjct: 308 KKRPPPPPPPSRRNRGKPPI------GNGSSNSSLPPPPPPPRSNAAGSIP 352



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/83 (22%), Positives = 20/83 (24%)
 Frame = -2

Query: 656 PPPXXXXGGGGXKKKXXXPPPPPXXFXXXGGGXKPXPXXGGGGGGXFXXXXXKKKXXXGG 477
           PPP               PPPPP       G  KP P   G             +    G
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRG--KP-PIGNGSSNSSLPPPPPPPRSNAAG 349

Query: 476 GXPXPXXXGEKKXXXPPXKXKKT 408
             P P          PP     T
Sbjct: 350 SIPLPPQGRSAPPPPPPRSAPST 372


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.064
 Identities = 19/60 (31%), Positives = 19/60 (31%)
 Frame = +1

Query: 475 PPPXXXFFFXXXXKKXPPPPPPXXGXGXXPPPXXKKXXGGGGGXXXFFFXPPPPXXXXGG 654
           PPP              P PPP    G  PPP       G G        PPPP    GG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPPAVSAGG 789



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 524 PPPPPPGXGXVXXXPPXXKXXGGGGGGXXFFFXXP 628
           PPPPPPG       PP         GG  ++   P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 30.3 bits (65), Expect = 0.34
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +1

Query: 523 PPPPPP--XXGXGXXPPPXXKKXXGGGGGXXXFFFXPPP 633
           PPPPPP    G G  PPP        GG     ++ P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSR---YYAPAP 797



 Score = 29.1 bits (62), Expect = 0.79
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
 Frame = +1

Query: 514 KKXPPPPP----PXXGXGXXPPPXXKKXXGGGGGXXXFFFXPPPPXXXXGGGXXPP 669
           K  PPPPP    P       P P      GG          PPPP    G G  PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP-------PPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 601 PPPPPXXFXGXGXGXNPXPPXGGGGG 524
           PPPPP    G G    P PP     G
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -2

Query: 656 PPPXXXXGGGGXKKKXXXPPPPPXXFXXXGGGXKPXPXXGGGGGG 522
           PPP    GG         PPPPP      G    P P      GG
Sbjct: 752 PPPAPIMGG-------PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 598 PPPPXXFXGXGXGXNPXPPXGGGGGXXF 515
           PPPP    G G G    P  G GG   F
Sbjct: 76  PPPPGAEGGPGAGFGGFPGAGPGGARTF 103


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 523 PPPPPPXXGXGXXPPP 570
           PPPPPP       PPP
Sbjct: 11  PPPPPPGFEPPSQPPP 26


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -2

Query: 635 GGGGXKKKXXXPPPPPXXFXXXGGGXKPXPXXGGGGG 525
           G GG       PPP P  F   GG        GG GG
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,306
Number of Sequences: 5004
Number of extensions: 36217
Number of successful extensions: 258
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)