Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_K20
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 40 0.003
07_03_1136 + 24218601-24218734,24218769-24219906 37 0.016
01_03_0005 + 11568545-11569119,11569179-11569191 35 0.083
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.0
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 30 2.4
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 29 4.1
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/81 (29%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Frame = -3
Query: 688 PPXGGXXXPPPPPXXXXXXXXKXXXKXXXXXGXXPPPXXFXXGXGGXXXPP-PXFXXXXX 512
PP GG PP PP PPP G GG PP
Sbjct: 1152 PPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPP 1211
Query: 511 GXPXXXXPXXGXGXLKKPPXG 449
G P P G L PP G
Sbjct: 1212 GVPGGPPPPPGGRGLPAPPGG 1232
Score = 37.1 bits (82), Expect = 0.016
Identities = 29/106 (27%), Positives = 30/106 (28%), Gaps = 1/106 (0%)
Frame = -3
Query: 688 PPXGGXXXPPPPPXXXXXXXXKXXXKXXXXXG-XXPPPXXFXXGXGGXXXPPPXFXXXXX 512
PP G PPPPP G PP G GG PPP
Sbjct: 1101 PPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPP---VGGL 1157
Query: 511 GXPXXXXPXXGXGXLKKPPXGGPX*NXGGGQXKGGXGFXXPKXPPG 374
G P P G PP +G G P PPG
Sbjct: 1158 GGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPG 1203
Score = 29.9 bits (64), Expect = 2.4
Identities = 31/117 (26%), Positives = 32/117 (27%), Gaps = 10/117 (8%)
Frame = +2
Query: 368 PPPXGXLXGXKPXPPF-----XLTPPXVLXGAXPGGFF*XPXT-----PXGXPXXXGAXX 517
PPP G + G P PP PP GG P P P G
Sbjct: 1112 PPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRG 1171
Query: 518 GXXKXXGGGXXXPPXPXKXXXGGGXXPXXXXFXXXFXXPXXXXPRGGGGXXXXPPXG 688
G G PP P GG P P P G G PP G
Sbjct: 1172 GTPPPNAHGGVAPPPPPPRGHGGVGGPPTPP-----GAPAPPMPPGVPGGPPPPPGG 1223
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = -2
Query: 689 PPXGGXXXXPPPPXXXXXXXXXXXXKXXXXXG-XXPPPXXFXXGXGGXXXPPP 534
PP GG PPPP G PP G GG PPP
Sbjct: 1113 PPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPP 1165
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/97 (23%), Positives = 25/97 (25%)
Frame = -1
Query: 660 PPPRGXXXXGFXKXXXXXXXXGXXPPPXXXFXGXGGXXXPPPXFFXXPFXAPXXXGXPXG 481
PPP + PPP G G PPP AP P G
Sbjct: 1085 PPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEG 1144
Query: 480 VXGF*KNPPGXAPXKTXGGVKXKGGXGXXPXXXPXGG 370
+ G PP G G P GG
Sbjct: 1145 IGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGG 1181
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 37.1 bits (82), Expect = 0.016
Identities = 25/77 (32%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Frame = -3
Query: 595 GXXPPPXXFXXGXGGXXXPPPXFXXXXXGXP-XXXXPXXGXGXLKKPPXGGPX*NXGGGQ 419
G PP G GG PP G P G G L +PP GG G
Sbjct: 114 GGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPP 173
Query: 418 XKGGXGFXXPKXPPGGG 368
GG G + P GGG
Sbjct: 174 GGGGGGGGPGRAPGGGG 190
Score = 36.3 bits (80), Expect = 0.027
Identities = 30/100 (30%), Positives = 30/100 (30%), Gaps = 3/100 (3%)
Frame = +2
Query: 398 KPXPPFXLTP---PXVLXGAXPGGFF*XPXTPXGXPXXXGAXXGXXKXXGGGXXXPPXPX 568
KP P TP P L G PGG G P G GGG P P
Sbjct: 71 KPDPEARTTPRPLPIKLLGLPPGG--------GGAPGPLGGGGARPPGGGGGGGPPSLPP 122
Query: 569 KXXXGGGXXPXXXXFXXXFXXPXXXXPRGGGGXXXXPPXG 688
GGG P P GGGG P G
Sbjct: 123 GAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPG 162
Score = 33.9 bits (74), Expect = 0.15
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = -3
Query: 562 GXGGXXXPPPXFXXXXXGXPXXXXPXXGXGX-LKKPPXGGPX*NXGGGQXKGGXGFXXPK 386
G GG P G P G G L +PP GG G GG G P
Sbjct: 137 GGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPG 196
Query: 385 XPPGGG 368
PGGG
Sbjct: 197 RAPGGG 202
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = +3
Query: 480 PXXGXXXXGXPXXXXXKXGGGXXXPPXPXXKXSGGGXXPXXXXXFXXXXXXXXXXXXGGG 659
P G G P GGG PP P GGG P GG
Sbjct: 108 PPGGGGGGGPPSLPPGAGGGGGARPPAPG--GGGGGGAPRRVLGGGGGGGALARPPGGGR 165
Query: 660 GGXXXPPXGG 689
GG P GG
Sbjct: 166 GGALGRPPGG 175
Score = 31.9 bits (69), Expect = 0.59
Identities = 32/109 (29%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Frame = -3
Query: 688 PPXGGXXXPPP--PPXXXXXXXXKXXXKXXXXXGXXPPPXXFXXGXGGXXXPPPXFXXXX 515
PP GG PP PP + G P G GG PP
Sbjct: 108 PPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPG---GG 164
Query: 514 XGXPXXXXPXXGXGXLKKPPXGGPX*NXGGGQXKGGXGFXXPKXPPGGG 368
G P G G GGP GGG GG G + P GGG
Sbjct: 165 RGGALGRPPGGGGGG------GGPGRAPGGGGGGGGPG----RAPGGGG 203
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = +1
Query: 490 GPXXXGXPKXXXKKXGGGXXXPPXPXKXXXGGGXXPXXXXXXXXFXKXXXXXXXGGGGXX 669
GP G + GGG P P GG P GGGG
Sbjct: 99 GPLGGGGARPPGGGGGGGPPSLP-PGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGAL 157
Query: 670 XXPPXGG 690
PP GG
Sbjct: 158 ARPPGGG 164
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Frame = -3
Query: 556 GGXXXPPPXFXXXXXGXPXXXXPXXGXGXLKKPPXGGPX*NXGGGQXK----GGXGFXXP 389
GG PP G P G G + P GG GGG + GG G
Sbjct: 102 GGGGARPPG-GGGGGGPPSLPPGAGGGGGARPPAPGG---GGGGGAPRRVLGGGGGGGAL 157
Query: 388 KXPPGGG 368
PPGGG
Sbjct: 158 ARPPGGG 164
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 34.7 bits (76), Expect = 0.083
Identities = 25/78 (32%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Frame = -3
Query: 586 PPPXXFXXGXGGXXX--------PPPXFXXXXXGXPXXXXPXXGXGXLKKPPXGGPX*NX 431
PPP + G GG PPP + G G G PP GG
Sbjct: 70 PPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTG-----GGGIYYPPPTGGGGGGG 124
Query: 430 GGGQXKGGXGFXXPKXPP 377
GG Q GG G P PP
Sbjct: 125 GGWQQGGGGGGAYPTPPP 142
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -3
Query: 688 PPXGGXXXPPPPPXXXXXXXXKXXXKXXXXXGXXPPPXXFXXGXGGXXXPPP 533
PP PPPP K G PPP G G PPP
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPP 381
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/76 (32%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Frame = +2
Query: 368 PPPXGXLXGXKPXPPFXLTPPX--VLXGAXPGGFF*XPXTPXGXPXXXGAXXGXXKXXGG 541
PPP G PP PP G PGG P P G G GG
Sbjct: 338 PPPSSYGGGPGSYPPSYGAPPPNPPYSGGAPGGQGSLP------PSYDGGYGGRPMPGGG 391
Query: 542 GXXXPPXPXKXXXGGG 589
G PP P GGG
Sbjct: 392 GPGAPP-PYHGGGGGG 406
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/81 (27%), Positives = 25/81 (30%)
Frame = -3
Query: 595 GXXPPPXXFXXGXGGXXXPPPXFXXXXXGXPXXXXPXXGXGXLKKPPXGGPX*NXGGGQX 416
G P G GG PP F G G G P G + GGG
Sbjct: 28 GRGPSRWSSGGGGGGSGSPPHRFSRGGGGGGGDGGGGGGGGGRFHPYRGPSDHSGGGGYR 87
Query: 415 KGGXGFXXPKXPPGGGXXXKF 353
GG G PG G ++
Sbjct: 88 SGGGG---EYGEPGSGPRHRY 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,186,461
Number of Sequences: 37544
Number of extensions: 497479
Number of successful extensions: 1090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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