Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_K19
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.079
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.56 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.079
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +1

Query: 799 PPXXXPPPXPTXPXXXPXXXXRXXXPPPPPXXPXPXPPPPPPP 927
           P    P P P+ P   P    R   PP P   P P  PP  PP
Sbjct: 16  PSSGAPGPQPS-PHQSPQAPQRGS-PPNPSQGPPPGGPPGAPP 56



 Score = 27.5 bits (58), Expect = 0.18
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
 Frame = +2

Query: 740 GGGXPPPPPXXXPPXPXSPSPPX--XXPPPXXPXRXP 844
           G   P P P   P  P   SPP     PPP  P   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 26.2 bits (55), Expect = 0.42
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 751 APPPPXXXPPPPPXSXPPXXXPPPXP 828
           +P  P    PP P   PP   PP  P
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 25.8 bits (54), Expect = 0.56
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 752 PPPPPXXXPPXPXSPSPPXXXPPPXXPXRXP 844
           P  P    PP P S  PP   PP   P + P
Sbjct: 31  PQAPQRGSPPNP-SQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 12/37 (32%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
 Frame = +1

Query: 742 GGXAPPP-PXXXPPPPPXSXPPXXXPPPXPTXPXXXP 849
           G   P P P   P  P    PP     P P  P   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +2

Query: 740 GGGXPPPPPXXXPPXPXSPSPPXXXPPPXXPXRXP 844
           GG  PP      PP P   +     P P  P   P
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +1

Query: 745 GXAPPPPXXXPPPPPXSXPPXXXPPPXPTXPXXXP 849
           G   PP    P PP  +       PP P  P   P
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 746 GXPPPPPXXXPPXPXSPSPPXXXP 817
           G PP P    PP     +PP   P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 895 PXPXPPPPPP 924
           P P PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 25.4 bits (53), Expect = 0.74
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 742 GGXAPPPPXXXPPPPPXSXPP 804
           G    PP    PPPPP S  P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 740 GGGXPPPPPXXXPPXPXSPSP 802
           G    PP P   PP P S  P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 901 PXPPPPPPP 927
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 798 PPXXXPPPPP 827
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 894 PXPXPPXPPP 923
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 438 PXXPXXPPPPP 406
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 684 PPPPXPXXPPP 716
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 886 PXXPXPXPPPP 918
           P  P P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 895 PXPXPPPPPPP 927
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 497 PPKXXPPPP 471
           PPK  PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 678 PPPPPPXPXXP 710
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 886  PXXPXPXPPPPPP 924
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 508  PXXXTPXPPPXPP 546
            P   +P PPP PP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 907  PPPPPPP 927
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 907  PPPPPPP 927
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 678  PPPPPPXP 701
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 901  PXPPPPPP 924
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 673  RXKXPPXPPPP 641
            R + PP PPPP
Sbjct: 1351 RQQQPPPPPPP 1361



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 429  PXXPPPPPXXG 397
            P  PPPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,091
Number of Sequences: 438
Number of extensions: 17022
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)