Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_K12
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.75
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.75
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.75
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 4.0
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 4.0
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 4.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 7.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 7.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 7.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 542 GGXXXFXXGPPXPPXXXXXXXXXXPPPPGGG 634
GG GPP PP PPPP GG
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 566 GPPXPPXXXXXXXXXXPPPPGGG 634
GPP PP PPPP GG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGG 734
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -2
Query: 766 GXGXPPPPPXXXKKXXXXXXSPPPXXXXXXXXXXXXXXGXFFXXPPP 626
G PPPPP PPP G F PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 542 GGXXXFXXGPPXPPXXXXXXXXXXPPPPGGG 634
GG GPP PP PPPP GG
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 566 GPPXPPXXXXXXXXXXPPPPGGG 634
GPP PP PPPP GG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGG 734
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -2
Query: 766 GXGXPPPPPXXXKKXXXXXXSPPPXXXXXXXXXXXXXXGXFFXXPPP 626
G PPPPP PPP G F PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 542 GGXXXFXXGPPXPPXXXXXXXXXXPPPPGGG 634
GG GPP PP PPPP GG
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 566 GPPXPPXXXXXXXXXXPPPPGGG 634
GPP PP PPPP GG
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGG 317
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -2
Query: 766 GXGXPPPPPXXXKKXXXXXXSPPPXXXXXXXXXXXXXXGXFFXXPPP 626
G PPPPP PPP G F PPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +1
Query: 118 PPVPFRXNLXPFPPXRQXPQMGFXPFX*KNGGXKGPPFIXIXFFXPXKXPP 270
PPVP N+ PP P G P +G PP + P PP
Sbjct: 203 PPVPLTSNIPQAPPAPPPPIGGIAPVN-AHGAPPPPPLPPVGAGAPPPPPP 252
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +1
Query: 118 PPVPFRXNLXPFPPXRQXPQMGFXPFX*KNGGXKGPPFIXIXFFXPXKXPP 270
PPVP N+ PP P G P +G PP + P PP
Sbjct: 189 PPVPLTSNIPQAPPAPPPPIGGIAPVN-AHGAPPPPPLPPVGAGAPPPPPP 238
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +1
Query: 118 PPVPFRXNLXPFPPXRQXPQMGFXPFX*KNGGXKGPPFIXIXFFXPXKXPP 270
PPVP N+ PP P G P +G PP + P PP
Sbjct: 189 PPVPLTSNIPQAPPAPPPPIGGIAPVN-AHGAPPPPPLPPVGAGAPPPPPP 238
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 766 GXGXPPPPPXXXKKXXXXXXSPPP 695
G G PPPPP SPPP
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPP 274
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Frame = -2
Query: 760 GXPPPPPXXXKKXXXXXXSPPPXXXXXXXXXXXXXXG-XFFXXPPPXGGGXP 608
G PPPPP SPPP PPP GG P
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 321
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 766 GXGXPPPPPXXXKKXXXXXXSPPP 695
G G PPPPP SPPP
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPP 295
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Frame = -2
Query: 760 GXPPPPPXXXKKXXXXXXSPPPXXXXXXXXXXXXXXG-XFFXXPPPXGGGXP 608
G PPPPP SPPP PPP GG P
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 342
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 766 GXGXPPPPPXXXKKXXXXXXSPPP 695
G G PPPPP SPPP
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPP 280
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Frame = -2
Query: 760 GXPPPPPXXXKKXXXXXXSPPPXXXXXXXXXXXXXXG-XFFXXPPPXGGGXP 608
G PPPPP SPPP PPP GG P
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 327
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,390,265
Number of Sequences: 27780
Number of extensions: 189522
Number of successful extensions: 645
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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