Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_K10
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   5.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   5.0  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 61  SVYLANNYIVQYSVNVSHNNVSYAILLCYELYAI 162
           +++  NNY   Y+   ++NN +Y   L Y+ Y I
Sbjct: 89  TIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYII 122


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 154 IAHSTTILRTIHCYGTRLHCTVLYNYWLSIR 62
           +A S T   T+  YG R++CT +  Y  S++
Sbjct: 198 LATSLTEPYTLRNYGRRINCTYVALYPSSVQ 228


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 450 YSCVKEICVHFRCNHFLTDRHYLLVLCKR 536
           +SC   +  HF+  H  +D  Y+   C R
Sbjct: 15  FSCYYSLKRHFQDKHEQSDTLYVCEFCNR 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,381
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)