Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_K09
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    31   0.23 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.31 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.71 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.71 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +1

Query: 829 PPXXKKXXPPXXPXPPG--GXXPPPRGXXXXPPXPPP 933
           PP      PP  P PPG  G  PPP      PP PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP------PPPPPP 783



 Score = 31.5 bits (68), Expect(2) = 0.002
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 462 PPPXPPFXXPGXGGGGXXXPXKXPPPXXGGG 554
           PPP PP   PG  G G   P   PP    GG
Sbjct: 761 PPPPPP--PPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = +2

Query: 854 PXPPXXPXXGXPXPP----GGXXXXPPPPP 931
           P PP  P  G P PP    G     PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.3 bits (60), Expect(2) = 0.35
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 270 PVKXPPXXXXPPRGXXDPPPXKKKXXGGXPPPP 368
           P+  PP    P  G   PPP      G  PPPP
Sbjct: 748 PIPVPPPA--PIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
 Frame = +1

Query: 853 PPXXPXPPGGXXPPP----RGXXXXPPXPPP 933
           PP  P   G   PPP     G    PP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 829 PPXXKKXXPPXXPXPPGGXXPPPRGXXXXPPXPPP 933
           PP      P   P P     PPP      PP PPP
Sbjct: 734 PPPPAVIVPTPAPAPI--PVPPPAPIMGGPPPPPP 766



 Score = 25.4 bits (53), Expect(2) = 0.002
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +3

Query: 270 PVKXPPXXXXP-PRGXXDPPPXKKKXXGGXPPPP 368
           P   PP    P P     P P      GG PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 20.6 bits (41), Expect(2) = 0.35
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +3

Query: 462 PPPXPPFXXPGXGGGGXXXPXKXPPP 539
           PPP PP      GG     P     P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 854 PXPPXXPXXGXPXPPGGXXXXPPPPP 931
           P  P  P    P  PGG    PPPPP
Sbjct: 269 PGMPAMPMMNVPMGPGGAPLVPPPPP 294


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +1

Query: 829  PPXXK-KXXPPXXPXPPGGXXPPPRGXXXXPPXPPP 933
            PP  K     P  P P  G  P P+     PP PPP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = +1

Query: 832  PXXKKXXPPXXPXPPGGXXPP-PRGXXXXPPXPPP 933
            P   K      P PP    PP P+     PP PPP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 829  PPXXKKXXPPXXPXPPGGXXPPPRGXXXXPPXPPP 933
            PP       P  P P  G  P P      PP P P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 933 GGGGGGXXSXPPGGXGXPXXGXXGGXG 853
           GG GGG    PPG  G    G  GG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEG 217



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 930 GGGGGXXSXPPGGXGXPXXGXXGGXG 853
           GGG G     PGG G    G  GG G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLG 252



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -2

Query: 932 GGGXGGXXXXPRGGGXXPPGGXGXXGGXXFFXXGG 828
           GGG GG      GG   PP G G  GG   F   G
Sbjct: 187 GGGFGGFG----GGSGGPPPGPGGFGGFGGFGGEG 217


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +2

Query: 854 PXPPXXPXXGX-PXPPGGXXXXPPPPP 931
           P PP     G  P PP G    PPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
 Frame = +1

Query: 829 PPXXKKXXPPXXPX--PPGGXXPPPRG---XXXXPPXPPP 933
           PP  +   PP  P   P  G  PPP         PP PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
 Frame = +3

Query: 180 RXPXPPXRXRXRXRRQPXXXPAGDEXKKXXPVKXPPXXXX------PPRGXX--DPPPXK 335
           + P PP     R R +P     G       P   PP          PP+G     PPP +
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGN-GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367

Query: 336 KKXXGGXPPPPXIS 377
                G  PPP  S
Sbjct: 368 SAPSTGRQPPPLSS 381



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 821 PXXPRXKKXXXPXPPXXPXXGXPXPPGGXXXXPPPPP 931
           P  P         PP  P    P  P G    PP PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
 Frame = +1

Query: 829  PPXXKKXXPPXXPX---PPGGXXPPPRGXXXXPPXPPP 933
            PP      PP  P    PP    P P G    PP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 871 PPGGXXPPPRGXXXXPPXPPP 933
           PPG   PPP      PP  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP 25



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 856 PXXPXPPGGXXPPPRGXXXXPPXPPP 933
           P  P PP G  PP +     PP PPP
Sbjct: 9   PPPPPPPPGFEPPSQ----PPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 458 PXXPPXPPGXGPXLXXPXPXP 396
           P  PP PPG  P    P P P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -2

Query: 932 GGGXGGXXXXPRGGGXXPPGGXGXXGGXXFFXXGGXXAKK 813
           GGG GG     RGG     GG G   G      GG    K
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/68 (29%), Positives = 23/68 (33%)
 Frame = +3

Query: 186 PXPPXRXRXRXRRQPXXXPAGDEXKKXXPVKXPPXXXXPPRGXXDPPPXKKKXXGGXPPP 365
           P PP   +      P   P   E  +  P   PP     P G   PPP      G   PP
Sbjct: 208 PPPPMHHKPGEHMPPP--PMHHEPGEHMP---PPPMHHEP-GEHMPPPPMHHEPGEHMPP 261

Query: 366 PXISXEKG 389
           P +  E G
Sbjct: 262 PPMHHEPG 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,554
Number of Sequences: 5004
Number of extensions: 23406
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)