Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_K08
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.31 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 18/53 (33%), Positives = 18/53 (33%)
 Frame = +3

Query: 429 KXPPPPGXGGXXXGXXXLXPPXXPGXPGXXGGXXVPPPPXGXXXFPPKPGETP 587
           K PPPP              P  P  P   GG   PPPP G     P P   P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/50 (30%), Positives = 17/50 (34%)
 Frame = +3

Query: 486 PPXXPGXPGXXGGXXVPPPPXGXXXFPPKPGETPXKNFVPKGPKKAXNPK 635
           PP  P  PG  G    PPPP      PP         +    P+    PK
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP------PPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 434 PPPPGXXGXXFXXPXPXPP 490
           PPPPG  G     P P PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +3

Query: 534 PPPPXGXXXFP-PKPGETPXKNFVPKGPKKAXNPKRXXWGGXFPKXPPP 677
           PPPP      P P P   P    +  GP     P      G  P  PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 433 PPPPRGXGXXFXGPXPXPP 489
           PPPP   G    GP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 29/118 (24%), Positives = 32/118 (27%), Gaps = 15/118 (12%)
 Frame = +3

Query: 426 KKXPPPP--------GXGGXXXGXXXLXPPXXPGXPGXXGGXXVPPPPXGXXXFPPKP-- 575
           KK PPPP        G      G      P  P  P       +P PP G    PP P  
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367

Query: 576 -----GETPXKNFVPKGPKKAXNPKRXXWGGXFPKXPPPXXXHKKXXPPQXXGGXTPP 734
                G  P      +       P     G   P  PP     +   PP       PP
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.148    0.501 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,523
Number of Sequences: 5004
Number of extensions: 23400
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)