Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_K07
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    29   1.2  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    28   1.6  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    28   1.6  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   4.8  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   4.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.3  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    26   8.4  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +3

Query: 543  RSADTIVSSSAPSYGHHLSMVTYDKRVEGLGRGGLLNVFAALELKSRQAVSDDELELGAT 722
            + A  ++ +   +    LS V +    +     GL+N+ A L   + +AVSD   E  A+
Sbjct: 1508 KCAKLMIEAICRNLDFSLSTVDFQSSFQTANLPGLINISAFLPEFTSEAVSDYTKECIAS 1567

Query: 723  GHTDGPFCP 749
            G T   F P
Sbjct: 1568 GFTMARFLP 1576


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -2

Query: 193 NTLIKSKMKLLKFIINAKPI 134
           NTLIK K K+LKFII  +P+
Sbjct: 322 NTLIKDK-KMLKFIITVRPV 340


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 812 DCCTPHL*ICTGFGIRALRGLRAK 741
           + C PH+ +CT   + +L+G+++K
Sbjct: 74  ESCNPHITLCTFLALESLKGIQSK 97


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 202 LNKNTLIKSKMKLLKFIINAKPITDLNNF*SFYLHF 95
           LN  + I    K +  +   K IT LNN  S+Y+HF
Sbjct: 638 LNMQSDISIVDKRILLLRRGKVITVLNNLGSYYIHF 673


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 332  SSPCQTGILESVLPLGPWTHRYLL 403
            SSP  TG+L S   L  WT  Y L
Sbjct: 1053 SSPLFTGVLSSTAALPEWTSSYYL 1076


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 420 HSAQLEATQRSGAISIEDTKSSHDVSRQKL-VQWIANE-KVLERSADTIVSS 569
           HS+  +A   +  +S E TKSS DV R    V+ +  + K +++S  ++V+S
Sbjct: 737 HSSLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNS 788


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 685 RRSLMMSWSWEQQDILMVPFALSPRSARIPKPVQ 786
           +R ++  W     D+L  PF  +  S+R PKP +
Sbjct: 249 KRRVIEEWKESVLDVLDTPFDEAKASSRNPKPFE 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,727,562
Number of Sequences: 5004
Number of extensions: 78992
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)