Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_K07
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694... 29 3.8
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 29 5.0
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 29 5.0
11_06_0668 + 26081554-26082082,26082241-26082947 29 6.6
08_01_0395 - 3502750-3503033,3504844-3505663 29 6.6
11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289... 28 8.8
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 28 8.8
>08_02_0600 -
19166283-19166851,19166988-19168839,19169347-19169415,
19171797-19171844,19173500-19173622
Length = 886
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 501 QKLVQWIANEKVLERSADTIVSSSAPSYGH-HLSMVTYDKRVEGL 632
Q+L+ + KVLE + VSS A YGH + Y K V+ L
Sbjct: 3 QRLLHGVMEAKVLEAKLSS-VSSEASDYGHGQPKLAAYSKEVDSL 46
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 336 LDI*PSGHTSRLWGRRRMVALVRECVLRPHVRCLRKRDKN--YPQ 208
LD P+ T++ + RMV +C HV C+R+RD YP+
Sbjct: 463 LDDPPATTTTQGFSSDRMVISCEQCRREYHVGCMRERDNGLWYPE 507
>03_06_0769 +
36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 29.1 bits (62), Expect = 5.0
Identities = 32/142 (22%), Positives = 59/142 (41%)
Frame = +3
Query: 345 RPGSLNPSCHLVLGHIGICCFTGQKHSAQLEATQRSGAISIEDTKSSHDVSRQKLVQWIA 524
R G PS +V+ +I + T +KH + +Q S ++ ED+ SH ++ + +
Sbjct: 409 RSGKKKPSV-VVIRNINV---TSKKHGSSESESQTSSDVASEDSDDSHTEYSKRKNKRSS 464
Query: 525 NEKVLERSADTIVSSSAPSYGHHLSMVTYDKRVEGLGRGGLLNVFAALELKSRQAVSDDE 704
++K + + I+ Y D G G NVF + L++ + D++
Sbjct: 465 SKK---KESRKIILEPGDEYSRDEVAHRQD------GDQGNWNVFQSFLLRTEEKTKDND 515
Query: 705 LELGATGHTDGPFCPKPPQCPD 770
+L AT P K + D
Sbjct: 516 ADLFATERGPPPARRKESRTTD 537
>11_06_0668 + 26081554-26082082,26082241-26082947
Length = 411
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +1
Query: 304 AGSVSRRSNVQPMSDRDP*IRPATWSLDTSVSAASPGKSIQPN*KLLSVLAPSV*KTLKA 483
AG+VS S + +++R I L++S SAA+ G + +LL+VL ++ + L+
Sbjct: 18 AGAVSTVSRCRKLANRVQCIGDLLRELESS-SAAAAGDDDEATRRLLAVLEDALHRALEL 76
Query: 484 AMTCQ 498
+CQ
Sbjct: 77 VTSCQ 81
>08_01_0395 - 3502750-3503033,3504844-3505663
Length = 367
Score = 28.7 bits (61), Expect = 6.6
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Frame = +3
Query: 216 SSCHVYEGSA---REASEHIHVQERPCAVCPRGGKCVPKVKCPAHVRPGSLNPSCHLVLG 386
S CH G+A + + + R A P + V K PA S H +
Sbjct: 264 SKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVY 323
Query: 387 HIGICCFTGQKHSAQLEATQRSGAIS--IEDTKSSHDVSR 500
H+G+ Q+ + A QRSG + I+ K +SR
Sbjct: 324 HLGV---QAQRSTI---AGQRSGQVQRPIQKWKGPDKISR 357
>11_01_0382 -
2892887-2893161,2893593-2893717,2893801-2894013,
2894101-2895363,2895669-2895712
Length = 639
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 340 WAGHLTFGTHFPPLGQTAHGRSCT*MCSEASRALP 236
W G + GT++ P+G ++C +C E S +LP
Sbjct: 435 WTGIMKIGTNYIPVGAHFSNKACKKVC-ELSMSLP 468
>07_03_1723 -
29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 754 GLGQKG-PSVCPVAPXXXXXSETACRDFNSRAAKTFNNPPLPRPS 623
GL K PS+ P+ P S T R N A T PLP+ S
Sbjct: 644 GLSSKSSPSISPIKPSSAGPSSTGFRTGNLEAFPTSRGSPLPQES 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,514,060
Number of Sequences: 37544
Number of extensions: 590420
Number of successful extensions: 1747
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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