Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_K07
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   8.7  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   8.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   8.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = -3

Query: 828 PRWLARLL----HSPSIDLYRLWYPGTAG 754
           P+WL  L     HSP+ D    WY G  G
Sbjct: 652 PKWLQVLALWLNHSPNYDQVTNWYMGWKG 680


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 21/65 (32%), Positives = 25/65 (38%)
 Frame = +3

Query: 573 APSYGHHLSMVTYDKRVEGLGRGGLLNVFAALELKSRQAVSDDELELGATGHTDGPFCPK 752
           AP  GHH S       +     GGL          S  +  DDEL   +   T     P+
Sbjct: 514 APPSGHHASSAPL---LAATLAGGLCPHRRRANSGSTSS-GDDELHRASLSKT-----PQ 564

Query: 753 PPQCP 767
           PPQCP
Sbjct: 565 PPQCP 569


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 372 HLVLGHIGICCFTGQK 419
           H +LGH G  C   QK
Sbjct: 287 HAILGHSGFLCERHQK 302


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 861 QKXLEASIDSSPRWLARLLHSPSIDLYRLWYPGTAG 754
           +K LE  +D   +   R   S S D+Y + YP   G
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYG 155


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 861 QKXLEASIDSSPRWLARLLHSPSIDLYRLWYPGTAG 754
           +K LE  +D   +   R   S S D+Y + YP   G
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYG 155


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 861 QKXLEASIDSSPRWLARLLHSPSIDLYRLWYPGTAG 754
           +K LE  +D   +   R   S S D+Y + YP   G
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYG 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,601
Number of Sequences: 438
Number of extensions: 5484
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)