Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_J24
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    30   0.53 
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    28   2.2  
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    27   2.8  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   8.7  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   8.7  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 664 VRIVI*TIFIFKVLFETKFNMYGGDNELDLLQQEEAER 551
           +R  +  + I+ +LFE+KFNMYG   E ++    E E+
Sbjct: 547 LRATLGALTIYLLLFESKFNMYGNKAE-EISHMSEVEQ 583


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 216 DEHAQQFTGSLSFTNSARSKTGTRNDSFA-IMMHNKLTRLSENXERRLSFARNCEQ 52
           +EH +++  S +F N    + GTR D  + +  + K  RL +  E+RL    NC++
Sbjct: 200 EEHPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLI---NCDK 252


>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -1

Query: 258 IRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRNDSFAIMMHNKLTRLSENXERR 79
           +R +  SLH    +D++  +   +    +   SK+G  + S AI  ++ L R+ E+ ER 
Sbjct: 109 VRKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERH 168

Query: 78  LSFARN 61
                N
Sbjct: 169 KRMREN 174


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 344 SVCKKEKKYIDGELVVSRGCTWKRQDDFE 430
           +V   +  Y++ E+V  +   W+R  DFE
Sbjct: 32  TVTSSDGSYVEYEIVHQKRSVWRRYSDFE 60


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 116 INSLGYLKTXRDVYRLHEIANRIKILRN 33
           I+ +  LK  + ++RL+ + NRIK +RN
Sbjct: 903 ISDIESLKPLQMIHRLYLVGNRIKKMRN 930


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,913
Number of Sequences: 5004
Number of extensions: 55217
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)