Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_J24
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-11|AAB52666.1|  137|Caenorhabditis elegans Hypothetical p...    30   2.1  
AC024763-6|AAO12403.1|  603|Caenorhabditis elegans Calpain famil...    29   3.6  
Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U56965-11|AAB52666.1|  137|Caenorhabditis elegans Hypothetical
           protein C15H9.9 protein.
          Length = 137

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +2

Query: 185 SEPVNCWACSSNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAGATFPYLTASKSVCKKEK 364
           S  ++C+ C+SN NP C+       D G    F+ + C      TF    A    C+K  
Sbjct: 17  SANISCYQCTSNENPTCD-----ANDDGALEAFK-KTCTPLTEGTFKGNAAVG--CRKIT 68

Query: 365 KYIDGELVVSRGCTW 409
           + ++G L V R C +
Sbjct: 69  QSVEGVLSVVRECAY 83


>AC024763-6|AAO12403.1|  603|Caenorhabditis elegans Calpain family
           protein 4, isoform b protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 450 LEVGQPTSKSSWRFQVQPRLTTNSPSMYFFSFLHT 346
           +E G+ +SK SWR Q QP      PS+    FLH+
Sbjct: 566 MEDGEWSSKHSWRLQQQPIYLPQEPSI--LHFLHS 598


>Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical
           protein K12G11.3 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
 Frame = +2

Query: 194 VNCWACSSNVNPLCNDPFNIRIDTGNSYLFRLE---------NCDKNAGATFPYLTASKS 346
           +NC  C     PLC+   N   D   ++   L          N D N  A  P L A  +
Sbjct: 101 LNCEFCKKGHEPLCHHIQNYGFDRSGTFQEYLTIRGVDAAKINKDTNLAAAAPILCAGVT 160

Query: 347 VCK--KEKKYIDGELVVSRG 400
           V K  KE     G+++V  G
Sbjct: 161 VYKALKESNVAPGQIIVLTG 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,393,880
Number of Sequences: 27780
Number of extensions: 323245
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)