Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_J22
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...    30   2.7  
U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 103 RFKKKQQQNEVRSRF*FSYFYL*XCVIQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVK 282
           +F K+  +NE + +  FS FYL   ++Q    +  T F K L   +K   N   L  R+ 
Sbjct: 112 KFHKETTRNEQQLKLAFSEFYLSLVLVQNFQQLNATGFRKILKKHDKLTGNERGLDWRIN 171

Query: 283 EV 288
           +V
Sbjct: 172 KV 173


>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 460 TCRFQVGSLIQSLVGFSTLCWHKK 389
           T R+ +GSL+Q  +  ST+C+ KK
Sbjct: 39  TIRYILGSLLQDYINESTMCYWKK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,063,881
Number of Sequences: 27780
Number of extensions: 283332
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)