Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_J18
         (1096 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           30   2.8  
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980...    29   8.6  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -2

Query: 717 PPPPXXXXXXXXXXXXXXXPPPXXXXXGXGGGGGXXPPP 601
           PPPP               PPP     G GGGG   PPP
Sbjct: 351 PPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGG--PPPP 387


>06_03_1274 +
           28897491-28897707,28897804-28897935,28898029-28898096,
           28898216-28898280,28898468-28898534,28898630-28898917,
           28898995-28899102,28899236-28899487,28899918-28899997,
           28900092-28900185,28900728-28900810,28901319-28901873,
           28902085-28902616
          Length = 846

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -2

Query: 717 PPPPXXXXXXXXXXXXXXXPPPXXXXXGXGGGGGXXPPP 601
           PPPP                 P     G GGGG   PPP
Sbjct: 9   PPPPRAPAPWLHSSHRRRVAAPRGAGGGGGGGGAVPPPP 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,408,017
Number of Sequences: 37544
Number of extensions: 249493
Number of successful extensions: 2555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2362
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3281292076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)