Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_J18
(1096 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 2.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 2.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 2.2
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 30 2.5
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 30 3.3
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.8
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 29 7.7
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 29 7.7
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 29 7.7
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 29 7.7
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 717 PPPPXXXXXXXXXXXXXXXPPPXXXXXGXGGGGGXXPPP 601
PPPP PPP G G GG PPP
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 337
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 717 PPPPXXXXXXXXXXXXXXXPPPXXXXXGXGGGGGXXPPP 601
PPPP PPP G G GG PPP
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 347
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect(2) = 2.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 605 GGXXPPPPPXPXXXXXGG 658
GG PPPPP P GG
Sbjct: 766 GGCPPPPPPPPPGGFKGG 783
Score = 21.4 bits (43), Expect(2) = 2.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 602 GGGXXPPPPP 631
GG PPPPP
Sbjct: 756 GGPPPPPPPP 765
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect(2) = 2.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 605 GGXXPPPPPXPXXXXXGG 658
GG PPPPP P GG
Sbjct: 766 GGCPPPPPPPPPGGFKGG 783
Score = 21.4 bits (43), Expect(2) = 2.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 602 GGGXXPPPPP 631
GG PPPPP
Sbjct: 756 GGPPPPPPPP 765
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.5 bits (58), Expect(2) = 2.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 605 GGXXPPPPPXPXXXXXGG 658
GG PPPPP P GG
Sbjct: 349 GGCPPPPPPPPPGGFKGG 366
Score = 21.4 bits (43), Expect(2) = 2.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 602 GGGXXPPPPP 631
GG PPPPP
Sbjct: 339 GGPPPPPPPP 348
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 602 GGGXXPPPPPXPXXXXXGGGXXXXXXXXXXXXXXXGGG 715
GGG PPPP P GGG GGG
Sbjct: 25 GGGCCAPPPPPPCGGGCGGGAPAAGGYAVAPQAPIGGG 62
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 605 GGXXPPPPPXPXXXXXGGGXXXXXXXXXXXXXXXGGGG 718
G PPPPP P GGG GGGG
Sbjct: 28 GCAPPPPPPSPCGCGGGGGLALPQLPPLSLPSLGGGGG 65
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 602 GGGXXPPPPPXPXXXXXGGGXXXXXXXXXXXXXXXGGGG 718
G G PPPPP GGG GGGG
Sbjct: 26 GCGCAPPPPPPSPCGCGGGGGLALPQLPPLSLPSLGGGG 64
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 5.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 602 GGGXXPPPPPXPXXXXXGGG 661
GGG PPPPP GGG
Sbjct: 49 GGGCAPPPPPPACGGGCGGG 68
Score = 29.1 bits (62), Expect = 5.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 602 GGGXXPPPPPXPXXXXXGGG 661
GGG PPPPP GGG
Sbjct: 106 GGGCAPPPPPPACGGGCGGG 125
Score = 24.6 bits (51), Expect(2) = 8.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 660 PPPXXXXXGXGGGGG 616
PPP G GGGGG
Sbjct: 56 PPPPACGGGCGGGGG 70
Score = 22.2 bits (45), Expect(2) = 8.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 636 GXGGGGGXXPPP 601
G G GGG PPP
Sbjct: 102 GGGCGGGCAPPP 113
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 602 GGGXXPPPPPXPXXXXXGGGXXXXXXXXXXXXXXXGGGG 718
GGG PPP P GGG GGGG
Sbjct: 69 GGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGG 107
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 602 GGGXXPPPPPXPXXXXXGGGXXXXXXXXXXXXXXXGGGG 718
GGG PPP P GGG GGGG
Sbjct: 69 GGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGG 107
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 28.7 bits (61), Expect = 7.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 602 GGGXXPPPPPXPXXXXXGGG 661
G G PPPPP P GGG
Sbjct: 61 GYGAPPPPPPPPAFGGLGGG 80
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 28.7 bits (61), Expect = 7.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 602 GGGXXPPPPPXPXXXXXGGG 661
G G PPPPP P GGG
Sbjct: 61 GYGAPPPPPPPPAFGGLGGG 80
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 28.7 bits (61), Expect = 7.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 602 GGGXXPPPPPXPXXXXXGGG 661
G G PPPPP P GGG
Sbjct: 61 GYGAPPPPPPPPAFGGLGGG 80
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 28.7 bits (61), Expect = 7.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 660 PPPXXXXXGXGGGGGXXPPP 601
PPP G GGGG PPP
Sbjct: 33 PPPPACGCGGGGGGYAAPPP 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,612,473
Number of Sequences: 27780
Number of extensions: 110485
Number of successful extensions: 951
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2950351116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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