Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_J16
         (908 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015937-1|AAH15937.1|  479|Homo sapiens poly(A) binding protein...    31   7.6  
BC005295-1|AAH05295.1|  400|Homo sapiens poly(A) binding protein...    31   7.6  
AF013758-1|AAC39697.2|  479|Homo sapiens polyadenylate binding p...    31   7.6  

>BC015937-1|AAH15937.1|  479|Homo sapiens poly(A) binding protein
           interacting protein 1 protein.
          Length = 479

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 219 KIREDRESTWGRMAYNHDTYTIASPVMPPYFFVNELSY 332
           K+ E R S WGR+ +   TY  A+P   P +F+NE ++
Sbjct: 368 KLVELRSSNWGRV-HATSTYREATPENDPNYFMNEPTF 404


>BC005295-1|AAH05295.1|  400|Homo sapiens poly(A) binding protein
           interacting protein 1 protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 219 KIREDRESTWGRMAYNHDTYTIASPVMPPYFFVNELSY 332
           K+ E R S WGR+ +   TY  A+P   P +F+NE ++
Sbjct: 289 KLVELRSSNWGRV-HATSTYREATPENDPNYFMNEPTF 325


>AF013758-1|AAC39697.2|  479|Homo sapiens polyadenylate binding
           protein-interacting protein-1 protein.
          Length = 479

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 219 KIREDRESTWGRMAYNHDTYTIASPVMPPYFFVNELSY 332
           K+ E R S WGR+ +   TY  A+P   P +F+NE ++
Sbjct: 368 KLVELRSSNWGRV-HATSTYREATPENDPNYFMNEPTF 404


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,012,662
Number of Sequences: 237096
Number of extensions: 1928344
Number of successful extensions: 2149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2149
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)