Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_J14
(1045 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 45 2e-05
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.20
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.27
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.36
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.36
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 1.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.9
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 28 2.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 5.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 44.8 bits (101), Expect = 2e-05
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = +3
Query: 930 PPPPPXXGGGXPPPPPXXGXGXXPPPPXP 1016
PPP P GG PPPPP G PPPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 32.3 bits (70), Expect = 0.12
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Frame = +3
Query: 930 PPPPPXX------GGGXPPPPPXXGXGXXPPPPXPXGGGXXG 1037
PPPPP P PPP G PPPP P G G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 31.1 bits (67), Expect = 0.27
Identities = 24/67 (35%), Positives = 24/67 (35%)
Frame = +3
Query: 828 PXXXXPPAXXLFXXXHPPXXGGXGGXXXXXXXXXPPPPPXXGGGXPPPPPXXGXGXXPPP 1007
P PPA P GG PPPPP G PPPPP PPP
Sbjct: 748 PIPVPPPA---------PIMGG---------PPPPPPPPGVAGAGPPPPP-------PPP 782
Query: 1008 PXPXGGG 1028
P GG
Sbjct: 783 PAVSAGG 789
Score = 29.5 bits (63), Expect = 0.82
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -1
Query: 1036 PXXPPPXGXGGGGXXPXPXXGGGGGXPPPXXGGGGGXXXXXXXXXPPXP 890
P PPP G G G P P PPP GG P P
Sbjct: 762 PPPPPPPGVAGAGPPPPP-------PPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 1027 PPPXGXGGGGXXPXPXXGGGGGXPPP 950
PPP GG P P G G PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.20
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 930 PPPPPXXGGGXPPPPPXXGXGXXPPPP 1010
PPPPP P P G PPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 30.3 bits (65), Expect = 0.47
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 930 PPPPPXXGGGXPPPPPXXGXGXXPPPPXPXGGGXXG 1037
PPPP G PP PPPP P G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349
Score = 30.3 bits (65), Expect = 0.47
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 930 PPPPPXXGGGXPPPPPXXGXGXXPPPP 1010
PPPP G P PP PPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 1036 PXXPPPXGXGGGGXXPXPXXGGGGGXPPP 950
P PPP G P P G PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 932 PPPPPXXGGXPPPPPXXGGXXXXXPPXP 1015
PPPPP PP G PP P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPP 340
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.27
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -1
Query: 1015 GXGGGGXXPXPXXGGGGGXPPPXXGGGGG 929
G GGG GGG G PPP GG GG
Sbjct: 184 GHNGGGFG---GFGGGSGGPPPGPGGFGG 209
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 1021 PXGXGGGGXXPXPXXGGGGGXPPPXXGGGGG 929
P G GGG GG GG P GG GG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.36
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 933 PPPPXXGGGXPP--PPPXXGXGXXPPPPXP 1016
PPPP PP PP G PPPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 939 PPXXGGGXPPPPPXXGXGXXPPPPXPXG 1022
PP PPPPP PP P G
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.36
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 930 PP--PPPXXGGGXPPPPPXXGXGXXPPPPXPXG 1022
PP PPP PPPPP PPPP P G
Sbjct: 5 PPGNPPP------PPPPPGFEPPSQPPPPPPPG 31
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 941 PPXXGGXPPPPPXXGGXXXXXPPXPXGGG 1027
PP G PPPPP G PP P G
Sbjct: 5 PP--GNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 932 PPPPPXXGGXPPPPPXXGGXXXXXPPXP 1015
P P P PPPPP PP P
Sbjct: 734 PAPTPAVKHHPPPPPVRSSISPSMPPAP 761
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/61 (26%), Positives = 16/61 (26%)
Frame = +2
Query: 827 PXPXXXPXXXXFFXXXPPXXXGGGGGXXXXXXXXXPPPPPXXGGXPPPPPXXGGXXXXXP 1006
P P P PP G PP P G PP P G P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 1007 P 1009
P
Sbjct: 1194 P 1194
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 876 PPXXGGXGGXXXXXXXXXPPPPPXXGGGXPPPPPXXGXGXXPPPPXPXGG 1025
PP G PP P G PP PP PP P P G
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSAG 1225
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 876 PPXXGGXGGXXXXXXXXXPPPPPXXGGGXPPPPPXXGXGXXPPPPXPXG 1022
PP G PP P G P P P PP P P G
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVA---APPVPAPSG 1157
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 942 PXXGGGXPPPPPXXGXGXXPPPP 1010
P G G PPP G G PPP
Sbjct: 120 PVRGVGYTAPPPPAGFGRGAPPP 142
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 891 GXGGXXXXXXXXXPPPPPXXGGGXPPP 971
G G PPPP G G PPP
Sbjct: 116 GLAGPVRGVGYTAPPPPAGFGRGAPPP 142
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = +3
Query: 930 PPPPPX--XGGGXPPPPPXXGXGXXPPPP 1010
PPPP G PPPP G PPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPP 236
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +3
Query: 933 PPPPXX---GGGXPPPPPXXGXGXXPPPP 1010
PPPP G PPPP G PPP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +3
Query: 933 PPPPXX---GGGXPPPPPXXGXGXXPPPP 1010
PPPP G PPPP G PPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +3
Query: 933 PPPPXX---GGGXPPPPPXXGXGXXPPPP 1010
PPPP G PPPP G PPP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +3
Query: 933 PPPPXX---GGGXPPPPPXXGXGXXPPPP 1010
PPPP G PPPP G PPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +3
Query: 933 PPPPXX---GGGXPPPPPXXGXGXXPPPP 1010
PPPP G PPPP G PPP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +3
Query: 933 PPPPXX---GGGXPPPPPXXGXGXXPPPP 1010
PPPP G PPPP G PPP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +3
Query: 933 PPPPXX---GGGXPPPPPXXGXGXXPPPP 1010
PPPP G PPPP G PPP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +3
Query: 933 PPPPXX---GGGXPPPPPXXGXGXXPPPP 1010
PPPP G PPPP G PPP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,994
Number of Sequences: 5004
Number of extensions: 28667
Number of successful extensions: 318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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