Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_J13
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    32   0.095
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    28   1.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.7  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   6.3  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    26   6.3  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    26   6.3  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    26   8.3  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
 Frame = +3

Query: 264 GRSYNTSRDRVDE------SYKKTYRNE-SSVNYSNREYGGRGGSPERKRMRMEFHQ 413
           GR+Y +SR R D+       Y++ YR+E SS  Y + +   R  SP R+R R E H+
Sbjct: 16  GRNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQ--RRDYSPARRRDRYERHR 70


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 246 TRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSP 380
           ++  SG   +NT R   D+S+    +  S VN+S R+ G R  SP
Sbjct: 674 SKEKSGSMFFNTLRTVKDKSHVHDTQRSSDVNFS-RQNGTRSHSP 717


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 189 NCLDCYC-LYKNLCIRYLYHHCSSLVHNN 106
           N L C+  L  N CI Y Y  CSSL   N
Sbjct: 718 NFLRCFASLLHNCCIFYAYRACSSLFGEN 746


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 276 NTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKRMRMEFHQIQRRSI 431
           +TS +  D    +T  NES +NY   + G R    + KR+  +  Q QRR +
Sbjct: 144 STSTEHKDIEQLETEINESGINYKIGDNGSRWRMMKLKRV-FDMAQDQRRPV 194


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +3

Query: 270 SYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPE 383
           S N+++   + +  + Y N ++ NY+N     +GG+ +
Sbjct: 605 SGNSNKQNYNNNNNQNYGNNNNQNYNNNNNSSQGGNSQ 642


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 343 IQTESMEVEEDHQKEKE*GWSSIKSKEEASSTEED 447
           ++TE +E     +KE++ G      KE+++ T+ D
Sbjct: 174 LETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKND 208


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +3

Query: 285 RDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKRMRMEFHQIQRR 425
           R R +   +++  +   ++Y++R Y  R   P+R + R E+H  +R+
Sbjct: 291 RSRDNNLSRESSVSSKHLDYNSRNYNKRDRDPDRTKYR-EYHSERRK 336


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 231 MNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYH 133
           +N LR H+G  G  N      LY  L I  LYH
Sbjct: 279 LNLLRAHYGKAGSENIAVIKQLYHELQIPELYH 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,051
Number of Sequences: 5004
Number of extensions: 40245
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)