Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_J12
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    81   2e-16
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    40   4e-04
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    31   0.23 
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    30   0.40 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   4.9  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   6.5  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   8.6  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    26   8.6  

>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 30/52 (57%), Positives = 43/52 (82%)
 Frame = +2

Query: 65  EKCFKKCINKPGTSLDSSEQKCIAMCMDRYMDSWNLVSRTYSSRIQRERNNM 220
           E CF KCI +PG++ D +E+ C++ CM+RYMD+WN+VSRTY SR+QRE+ N+
Sbjct: 43  ENCFDKCIPEPGSTFDPNEKSCVSKCMERYMDAWNIVSRTYISRMQREQKNL 94


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +2

Query: 71  CFKKCINKPGTSLDSSEQKCIAMCMDRYMD-SWNLVSR 181
           C+ KCI   G  LD SE++C+  C++R++D +++++ R
Sbjct: 44  CWPKCIGNIGNKLDKSEEQCLQNCVERFLDCNFHIIKR 81


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 331 PFIFTLTKPAAS--TKVYETTTVYMYIKVFTPEVVFTALHVVSLALNSTAV 185
           P + T T P A+  T V ETTT  M   + TP VV T   +V   +  T V
Sbjct: 257 PTVETTTLPTAAMTTPVEETTTTPMVETMITPTVVTTTTPMVETMITPTVV 307


>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 65  EKCFKKCINK-PGTSLDSSEQKCIAMCMDRYMDSWNLVSRTYS 190
           + CF  C+     + L + E +CIA C D+++     V + ++
Sbjct: 33  QNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVGQRFA 75


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -2

Query: 320 HINKTSGIDKSL*NYYSLYVHQSF----YSRSSVYSLTCCFSR 204
           H+N TSG+D +L  Y +++    +    ++ ++VY+ +C + R
Sbjct: 193 HLNDTSGVDFNLNEYNAMWKTSEYRYVDFNFTNVYNTSCEYPR 235


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 93  SQVLLWIAPNRSA*LCVWIGTWIHGISYRG 182
           S  LL +A +    LC  +  W HG+S RG
Sbjct: 41  SPALLSLAQSFMTVLCGLLWNWFHGVSARG 70


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 65  EKCFKKCINKPGTSLDSSEQKCIAMCMDRYMDSWNLVSRTYSSRIQ-RER 211
           E+ +K    K G   DS + K   MC+++ + +  ++ R Y      RER
Sbjct: 339 EELWKSLFLKDGFFWDSIDSKIRTMCLEQSLSACAIMKRVYFRHFNLRER 388


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 141 VWIGTWIHGISYRGHTAVEFNARETTCKAVNTTSGVKTL-MYI*TVV 278
           +W   +   I + G+   +  +R  TC ++   +   TL +Y+ TV+
Sbjct: 54  IWSNPYAETIRWMGYGLCDITSRIVTCSSIGIPASAFTLVLYLDTVI 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,074
Number of Sequences: 5004
Number of extensions: 38517
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)