Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_J11
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    29   0.70 
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    29   0.70 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   2.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.8  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   6.6  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    26   6.6  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   8.7  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 392 FVCCRCFAIDQCLDQRAITNATSSTSIPRFYLVVSIVPHTSNLKKSTMCLS 240
           F C +CF  D C D  A          P F LV S +P  ++L  S   +S
Sbjct: 74  FHCTKCFDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVASLTCSVNSMS 124


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = -3

Query: 589 SGSCGRHTTKNTANGLKRTQTPSHAIRNHVGRNAICSNIVHRMLCTEVA 443
           S  CGR   K+ A  +K  +  S+A++N +  + I  N+V +ML +++A
Sbjct: 319 SAFCGRLNDKSVACRIKCIEVASNALQNSLATSEIIENVV-QMLQSKLA 366


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 383 CRCFAIDQCLDQRAITNATSSTSIPRFYLVVSIVPHTSNLKKSTMCLS 240
           C  ++    + Q  + NATS    PR   +VSIVP  +   +   C++
Sbjct: 282 CVFYSFSSMISQAQMLNATSPLLDPRTTQIVSIVPIPAYESQQIYCVA 329


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 466 RMLCTEVAKHILQYVMLVITIIVCILFV 383
           R+    +++ +L Y +L I I+VCILF+
Sbjct: 536 RLKVLGISRDLLAYAILFIHIMVCILFL 563


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = -1

Query: 342 NYERHIIHKYSSFLFGCFDSPTYVKPEEVDDVFELTLFSLSVRRLVLKSKFXRVVASGLR 163
           NYE+ ++ + S FLF    SP  +K ++   +   +L + S  R++  S +      G++
Sbjct: 282 NYEQPLLAQISEFLFNSQISPK-IKSKKNSLITNYSLSTSSKERMLFLSSYFENCFKGVK 340

Query: 162 AI 157
           ++
Sbjct: 341 SL 342


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 565 TKNTANGLKRTQTPSHAIRNHVGRNAI 485
           T NT N LK+  +  + +R H+ RN+I
Sbjct: 243 TDNTENNLKKKASFIYRLRKHLKRNSI 269


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 452 STQHSMNNVRTDSVSAHVVPDGVAGGLRPLQSVRCILRGV 571
           S+ HS  +   DS S+ V   G  G L PL+    I  GV
Sbjct: 524 SSSHSTLSYANDSASSAVNVAGETGSLPPLREQTSITSGV 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,129
Number of Sequences: 5004
Number of extensions: 51101
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)