Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_J10
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 33 0.056
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 29 1.2
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 28 2.1
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 3.7
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 3.7
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 3.7
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 4.9
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 4.9
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 26 6.4
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 26 8.5
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 8.5
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 26 8.5
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.056
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 556 RSKKTDENQLKITKANTKKPSKDKMAAGEVADAPKRKKTKSSKDAPTXRPKK 711
+ ++ +N K T N + PSK K E +DA K K SSK P PKK
Sbjct: 47 KQRQKQKNTKKDTLVNRETPSK-KSQKLETSDALKSKSKDSSKKEPVVVPKK 97
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 534 ERENRETEKQEDG*ESIENHESE 602
E ENRE + G ES+EN ESE
Sbjct: 644 ENENRELSEDYSGDESLENSESE 666
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 638 ERSRTRRKEKKQNRPKTRQLPAQKKFHADEKEK-LREFXKTAKMKPKA 778
E++R RR E ++ PK PA+ K A K+K ++E T + K K+
Sbjct: 491 EQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEVKEKRNTRREKRKS 538
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 565 KTDENQLKITKANTKKPSKDKMAAGEVADAP-KRKKTKSSKD 687
++ + + K K K SK K E ++P K+KK+K SKD
Sbjct: 467 ESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKKSKD 508
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 556 RSKKTDENQLKITKANTKKPSKDKMAAGEVADAPKRKKTKSSK 684
++ K E +TK NT+ P + K EV P RK ++S+K
Sbjct: 577 KTNKRRELPSSLTKKNTRTPQRSK----EVKKVPARKLSQSTK 615
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 613 PSKDKMAAGEVAD-APKRKKTKSSKDAPTXR 702
P +DK +AGEV D KR++ S A T R
Sbjct: 239 PKRDKRSAGEVQDEIMKRRQNSSISQAATPR 269
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 559 SKKTDENQLKITKANTKKPSKDKMAAGEVA----DAPKRKKTKSSKDAP 693
S+ +++++ K K+ +K + + G++ D K+KK+K + DAP
Sbjct: 143 SESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAP 191
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 565 KTDENQLKITKANTKKPSKDKMAAGEVADAPKRKKTKSS 681
K D +QL ITKA +K KMA E+A+ +++ S+
Sbjct: 860 KIDMSQLVITKALSKTDYAAKMAHVELAERMRKRDAGSA 898
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -1
Query: 194 SWIMSFVLFFSIKTSAV----WMVCFFFFAVALGKGV 96
S I++ VL F + T AV M+CFFF+ ++ G+
Sbjct: 109 SSILAQVLLFFMTTGAVRRYSMMLCFFFWRISYDAGI 145
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Frame = +3
Query: 117 SKEEK---TNHPNRRSLDRE----EKNKRHDPRGSRRTED*KR 224
SKEE T+H NRR RE + +R+ R SR T D KR
Sbjct: 152 SKEESKTVTDHSNRRESRRESTYYDSRERNGKRTSRSTLDRKR 194
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 635 PERSRTRRKEKKQNRPKTRQLPAQKKFHADEKEK 736
P+RS + ++ +Q +T L QK+ ADEK K
Sbjct: 394 PQRSAIKARDDEQVEGQTLFLLDQKQLGADEKPK 427
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 129 KTNHPNRRSLDREEKNKRHDPRGSRRTE 212
K++H NR+ + +E R DP RR E
Sbjct: 24 KSSHENRKEVVQEHSRMRIDPALERRLE 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,828
Number of Sequences: 5004
Number of extensions: 39522
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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