Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_J10
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0041 + 10046063-10046170,10046284-10046742 34 0.14
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 32 0.72
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 30 2.9
08_01_0397 - 3509186-3510291,3510322-3512335 29 5.1
02_01_0526 - 3830705-3830932,3831684-3831748,3831958-3832104,383... 29 5.1
01_05_0530 + 22984672-22984821,22985444-22985676,22986659-229867... 29 5.1
10_01_0133 + 1621574-1625779 29 6.7
05_01_0193 + 1400963-1401083,1401671-1401888,1401983-1402172,140... 29 6.7
02_05_0006 - 24897409-24897922,24898041-24898303 29 6.7
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119 28 8.9
>04_03_0041 + 10046063-10046170,10046284-10046742
Length = 188
Score = 34.3 bits (75), Expect = 0.14
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +1
Query: 181 DMIHEALGELKTRKGVSLYAIKKYITEKYRVDADKINY--LIKKQIKNGVIDGAIVQTKG 354
+MI EA+ LK R G S +AI KY+ EK+ NY ++ Q++ G +V+ K
Sbjct: 36 EMIKEAITVLKERTGSSAHAIAKYMEEKHGASL-PANYKKMLSIQLRGFASKGKLVKVK- 93
Query: 355 VGAAGSFKLA-PIKEKKKQTP 414
S+KL+ K+ K P
Sbjct: 94 ----ASYKLSDAAKDSPKAKP 110
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 31.9 bits (69), Expect = 0.72
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 105 AQSDSKEEKTNHPNRRSLDREEKNKRHDPRGSRRTED*KRRFIIRHQE 248
++SD KE K + L +EE+ +R + R R+ + + ++H E
Sbjct: 219 SESDDKESKRRRKEEKRLRKEERRRRREERHRRKADRQASKLKLKHAE 266
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 108 QSDSKEEKTNHPNRRSLDREEKNKRHDPRGSRRTED*KRR 227
+ D ++E+ RRS DRE++ ++ R R +D +RR
Sbjct: 103 EKDREKERDKDKERRSRDREKEKEKEKEREREREKDRERR 142
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 108 QSDSKEEKTNHPNRRSLDREEKNKRHDPRGSRRTE----D*KRRFIIRHQEIHHR 260
+ + ++E+ R DREE+++R + E D KRR H HHR
Sbjct: 78 EREKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRKRRRRSSHHHHHHR 132
>02_01_0526 -
3830705-3830932,3831684-3831748,3831958-3832104,
3832208-3832256
Length = 162
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 638 ERSRTRRKEKKQ-NRPKTRQLPAQKKFHADEKEKLREFXKTAKMKPKAXD 784
E R RRK+KK +R K ++ +++K H+ EKEK + K K + D
Sbjct: 47 EEERRRRKKKKHGDRGKDKERDSKEK-HSKEKEKSKRKHKDDDFKEISKD 95
>01_05_0530 +
22984672-22984821,22985444-22985676,22986659-22986743,
22986953-22987036,22987114-22987455
Length = 297
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 172 RTKDMIHEALGELKTRKGVSLYAIKKYITEKYRVDADKINYLIKKQIKNGVIDGAIVQ 345
R D+I EA+ +LK G + I YI E+Y D L+ ++K V G +++
Sbjct: 128 RLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPED-FQRLLSTKLKALVATGKLIK 184
>10_01_0133 + 1621574-1625779
Length = 1401
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 559 SKKTDENQLKITKANTKKPSKDKMAAGEVADAPKRKKTKSSKDAPTXRPKKIP 717
SKKT QLK+ ++ T+K K ++ GE+ +T ++ D T P +P
Sbjct: 668 SKKTMNTQLKLNRSVTRKWDKFRLMMGEI-------QTPATNDHLTSLPSSLP 713
>05_01_0193 +
1400963-1401083,1401671-1401888,1401983-1402172,
1402391-1402782,1402971-1403381
Length = 443
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 513 QTEAGCSERENRETEKQEDG*ESIENHESEYEKTVERQ 626
+ AGC ER N E + ++D S+ + + + T +RQ
Sbjct: 368 EVPAGCEERINAEPQNRKDEDPSVTGNTKKDQSTFDRQ 405
>02_05_0006 - 24897409-24897922,24898041-24898303
Length = 258
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 565 KTDENQLKITKANTKKPSKDKMAAGEVADAPKRKKTKSS 681
+TD + + KK + K ++G A APKRK TK +
Sbjct: 99 RTDNEIKNVWHTHLKKRLEPKPSSGREAAAPKRKATKKA 137
>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
Length = 440
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 635 PERSRTRRKEKKQNRPKTRQLPAQKKFHADEKEKLR 742
P ++ R+K+KK+ + K ++ +KK +K+KLR
Sbjct: 366 PSKTIKRKKKKKKKKKKKKKKKKKKKKKKKKKKKLR 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,796,823
Number of Sequences: 37544
Number of extensions: 231696
Number of successful extensions: 1028
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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