Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_J09
(1101 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical... 32 0.83
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.1
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.1
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 31 1.5
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 31 1.5
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 31 1.5
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 31 1.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 3.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 3.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 3.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.9
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 29 7.8
>AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical
protein C35E7.1 protein.
Length = 729
Score = 31.9 bits (69), Expect = 0.83
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 129 CXPKVSKKNLFFQKNFFWPP 188
C PK+++KNLF Q+ FW P
Sbjct: 43 CQPKITEKNLFPQEGTFWDP 62
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.5 bits (68), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 640 PPPPPXXXGGGXXXFFXPPPP 578
PPPPP G G F PPPP
Sbjct: 305 PPPPPHFMGRGMPPPFMPPPP 325
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.5 bits (68), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 640 PPPPPXXXGGGXXXFFXPPPP 578
PPPPP G G F PPPP
Sbjct: 305 PPPPPHFMGRGMPPPFMPPPP 325
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 31.1 bits (67), Expect = 1.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 662 KKKKXXXPPPPPXXXGGGXGXFFXPPPP 579
KKK PPPPP G G + PP P
Sbjct: 1277 KKKPPLQPPPPPQMTGPPIGIYPGPPAP 1304
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 31.1 bits (67), Expect = 1.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 641 PPPPPXXXGGGXGXFFXPPP 582
PPPP GGG G + PPP
Sbjct: 33 PPPPACGCGGGGGGYAAPPP 52
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 31.1 bits (67), Expect = 1.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 662 KKKKXXXPPPPPXXXGGGXGXFFXPPPP 579
KKK PPPPP G G + PP P
Sbjct: 1277 KKKPPLQPPPPPQMTGPPIGIYPGPPAP 1304
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 640 PPPPPXXXGGGXXXFFXPPPP 578
PPPPP GGG PPPP
Sbjct: 40 PPPPPPPCGGGYEAPPPPPPP 60
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 641 PPPPPXXXGGGXGXFFXPPPP 579
PPPPP GG G PPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 641 PPPPPXXXGGGXGXFFXPPPP 579
PPPPP GG G PPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 641 PPPPPXXXGGGXGXFFXPPPP 579
PPPPP GG G PPPP
Sbjct: 353 PPPPPPPPGGFKGGPPPPPPP 373
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 641 PPPPPXXXGGGXGXFFXPPPP 579
PPPPP G G + PPPP
Sbjct: 349 PPPPPRYPSAGPG-MYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 641 PPPPPXXXGGGXGXFFXPPPP 579
PPPPP G G + PPPP
Sbjct: 359 PPPPPRYPSAGPG-MYPPPPP 378
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 617 GGGXGXFFXPPPPXXXXXXXXGGXKKKK 534
GGG G PPPP GG KK++
Sbjct: 37 GGGGGCCAPPPPPPVCGGCGCGGRKKRE 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,481,460
Number of Sequences: 27780
Number of extensions: 335159
Number of successful extensions: 1378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2971275592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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