Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_J06
         (941 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   9.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 472 AATFISPTPFSSRRKSSAVKPSSADSGNTSRTPTRIASRAFS 347
           AA   S +P      SS+  PSS  S  +S +PT + S  ++
Sbjct: 73  AAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPTSLGSENYT 114


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 277 SSRPPGMSSTQPPPSSSHISKLKL 206
           S  PP  +   PPPSSS     KL
Sbjct: 335 SDTPPKPAPPPPPPSSSGPDSAKL 358


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 348 EKALEAMRVGVLDVLPESALEGLTAEDLRLLL 443
           EKAL    + + D++  S LEG   + LR LL
Sbjct: 711 EKALLKPLLSLEDLVRFSTLEGSGGDSLRTLL 742


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 426 PPPSNLLAQILVTRQEPQ 373
           PP  NL+ QIL+ + E Q
Sbjct: 34  PPTLNLMEQILLAKIEKQ 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,976
Number of Sequences: 438
Number of extensions: 4498
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)