Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_J05
(942 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.010
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.010
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.010
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 33 0.22
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 33 0.22
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.30
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.30
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.30
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.2
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 1.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.6
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 6.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 6.4
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.4
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.4
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 8.4
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 8.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 8.4
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 28 8.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.9 bits (84), Expect = 0.010
Identities = 25/73 (34%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Frame = +2
Query: 734 GFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPG-----EGXGLXXNXPPXGSPXXVKDPPP 898
G P P PPP TG P PPG G PP G P PPP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Query: 899 KRAWGENPPLTPP 937
G PP PP
Sbjct: 778 GGFKGGPPPPPPP 790
Score = 31.9 bits (69), Expect = 0.68
Identities = 23/76 (30%), Positives = 25/76 (32%)
Frame = +2
Query: 707 PPGXXXXNXGFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXVK 886
PPG G P PP PP S G P PPG PP G
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISG-----GPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 887 DPPPKRAWGENPPLTP 934
PPP + P+ P
Sbjct: 786 PPPPPGMFAPMAPVIP 801
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 563 GFPPXLGXXLFPPX--GGVXPXPPPXXPGPXGXWGGXP 456
G PP G PP GG P PPP P P G GG P
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPP--PPPGGFKGGPP 785
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Frame = +2
Query: 767 PPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXVK-----DPPPKRAWGENPPLT 931
PPP TG P PPG + PP P + PPP G PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 932 PP 937
PP
Sbjct: 773 PP 774
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Frame = -2
Query: 566 PGFPPXL-GXXLFPPXGGVXP----XPPPXXPGPXGXWGGXP 456
PG PP G PP GG+ P PPP PG G P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGP 758
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.9 bits (84), Expect = 0.010
Identities = 25/73 (34%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Frame = +2
Query: 734 GFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPG-----EGXGLXXNXPPXGSPXXVKDPPP 898
G P P PPP TG P PPG G PP G P PPP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Query: 899 KRAWGENPPLTPP 937
G PP PP
Sbjct: 778 GGFKGGPPPPPPP 790
Score = 31.9 bits (69), Expect = 0.68
Identities = 23/76 (30%), Positives = 25/76 (32%)
Frame = +2
Query: 707 PPGXXXXNXGFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXVK 886
PPG G P PP PP S G P PPG PP G
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISG-----GPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 887 DPPPKRAWGENPPLTP 934
PPP + P+ P
Sbjct: 786 PPPPPGMFAPMAPVIP 801
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 563 GFPPXLGXXLFPPX--GGVXPXPPPXXPGPXGXWGGXP 456
G PP G PP GG P PPP P P G GG P
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPP--PPPGGFKGGPP 785
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Frame = +2
Query: 767 PPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXVK-----DPPPKRAWGENPPLT 931
PPP TG P PPG + PP P + PPP G PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 932 PP 937
PP
Sbjct: 773 PP 774
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Frame = -2
Query: 566 PGFPPXL-GXXLFPPXGGVXP----XPPPXXPGPXGXWGGXP 456
PG PP G PP GG+ P PPP PG G P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGP 758
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.9 bits (84), Expect = 0.010
Identities = 25/73 (34%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Frame = +2
Query: 734 GFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPG-----EGXGLXXNXPPXGSPXXVKDPPP 898
G P P PPP TG P PPG G PP G P PPP
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Query: 899 KRAWGENPPLTPP 937
G PP PP
Sbjct: 361 GGFKGGPPPPPPP 373
Score = 31.9 bits (69), Expect = 0.68
Identities = 23/76 (30%), Positives = 25/76 (32%)
Frame = +2
Query: 707 PPGXXXXNXGFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXVK 886
PPG G P PP PP S G P PPG PP G
Sbjct: 314 PPGGLPPITGGPPPPPPPGGLPPISG-----GPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Query: 887 DPPPKRAWGENPPLTP 934
PPP + P+ P
Sbjct: 369 PPPPPGMFAPMAPVIP 384
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 563 GFPPXLGXXLFPPX--GGVXPXPPPXXPGPXGXWGGXP 456
G PP G PP GG P PPP P P G GG P
Sbjct: 333 GLPPISGGPPPPPPPPGGCPPPPPP--PPPGGFKGGPP 368
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Frame = +2
Query: 767 PPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXVK-----DPPPKRAWGENPPLT 931
PPP TG P PPG + PP P + PPP G PP
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Query: 932 PP 937
PP
Sbjct: 356 PP 357
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Frame = -2
Query: 566 PGFPPXL-GXXLFPPXGGVXP----XPPPXXPGPXGXWGGXP 456
PG PP G PP GG+ P PPP PG G P
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGP 341
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 486 GXXGXVGGEXXXXPIXXPXXPGGXXIFLXPEXPPPPXPG 370
G G GG P+ P GG F+ P PPPP PG
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGG---FMPPPPPPPPMPG 684
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 486 GXXGXVGGEXXXXPIXXPXXPGGXXIFLXPEXPPPPXPG 370
G G GG P+ P GG F+ P PPPP PG
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGG---FMPPPPPPPPMPG 684
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.1 bits (72), Expect = 0.30
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Frame = +2
Query: 698 GXTPPGXXXXNXGFXPXXXPP---RXP-PPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPX 865
G TP + G P PP R P PP F PPG G G+ PP
Sbjct: 282 GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG-GMPPPPPPG 340
Query: 866 GS-PXXVKDPPPKRAWGENPPLTPP 937
P + PPP R P + PP
Sbjct: 341 MRYPGGMPPPPPPRYPSAGPGMYPP 365
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 13/80 (16%)
Frame = +2
Query: 737 FXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXP---------PXGSPXXVKD 889
+ P PP P T + P PP G+ P P G P
Sbjct: 260 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
Query: 890 PPPKR----AWGENPPLTPP 937
PPP R G PP PP
Sbjct: 320 PPPSRFGPPGMGGMPPPPPP 339
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 566 PGFPPXLGXXLFPPX-GGVXPXPPPXXPGPXGXWGGXP 456
P PP G PP G+ P PPP GP G GG P
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPG-MGGMP 334
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 812 PFXPPGEGXGLXXNXPPXGSPXXVKDPPPKRAWGENPPLTPP 937
P PP + + PP P + PPP+ PP+TPP
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPP 165
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +2
Query: 743 PXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXVKDPPPK 901
P PPR PPP T PP PP P + PPP+
Sbjct: 147 PRTPPPRSPPP--RRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPR 197
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.1 bits (72), Expect = 0.30
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Frame = +2
Query: 698 GXTPPGXXXXNXGFXPXXXPP---RXP-PPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPX 865
G TP + G P PP R P PP F PPG G G+ PP
Sbjct: 292 GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG-GMPPPPPPG 350
Query: 866 GS-PXXVKDPPPKRAWGENPPLTPP 937
P + PPP R P + PP
Sbjct: 351 MRYPGGMPPPPPPRYPSAGPGMYPP 375
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 13/80 (16%)
Frame = +2
Query: 737 FXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXP---------PXGSPXXVKD 889
+ P PP P T + P PP G+ P P G P
Sbjct: 270 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
Query: 890 PPPKR----AWGENPPLTPP 937
PPP R G PP PP
Sbjct: 330 PPPSRFGPPGMGGMPPPPPP 349
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 566 PGFPPXLGXXLFPPX-GGVXPXPPPXXPGPXGXWGGXP 456
P PP G PP G+ P PPP GP G GG P
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPG-MGGMP 344
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.2
Identities = 46/167 (27%), Positives = 54/167 (32%), Gaps = 8/167 (4%)
Frame = +2
Query: 464 PPTNPXXPAFXGGXXXXPPXRGEKGXXPXXGETPXKXI*QXGPQXPXNLKKGPXXGXFXX 643
PP+ P P+ GG + + G P G P + PQ P + GP G F
Sbjct: 297 PPSGP--PSEYGGYAPPQQQQQQFGAPPPQG-APQQGF-GAPPQGPP--QGGPPQGSFGA 350
Query: 644 XXXXXXXXXXXXXXQFKRGXTPP-GXXXXNXGFXPXXXPPRX--PPP--FSXXXXXTGXL 808
Q G PP N P PP PPP F G
Sbjct: 351 PPPQQFHAPSP---QSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPG 407
Query: 809 XPFXPPGEGXGLXXNX-PPXGSPXXVKDPPPKRAWGENPPLT--PPL 940
PP G G + PP G P PPP PP T PP+
Sbjct: 408 GYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPV 454
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = -2
Query: 566 PGFPPXLGXXLFPPXG--GVXPXPPPXXPGPXGXWGGXP 456
PG PP PP G G P PPP GP G P
Sbjct: 696 PGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPP 734
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/80 (30%), Positives = 27/80 (33%)
Frame = +2
Query: 698 GXTPPGXXXXNXGFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPX 877
G PPG F PP P F G + P PP G+ P G
Sbjct: 50 GILPPGQSIPKPSFF---IPPPVPNGFIPPPPGPGGIPP-PPPMFAGGIPPPPPMMGGI- 104
Query: 878 XVKDPPPKRAWGENPPLTPP 937
PPP +G PP PP
Sbjct: 105 ----PPPPPMFGAPPPPPPP 120
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/74 (32%), Positives = 26/74 (35%)
Frame = +2
Query: 704 TPPGXXXXNXGFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXV 883
+PP P P PP S G P PP G PP GSP
Sbjct: 254 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP--PPRAGSP-PPPPPPRGSPPTG 310
Query: 884 KDPPPKRAWGENPP 925
PPP +A G PP
Sbjct: 311 SLPPP-QAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/74 (32%), Positives = 26/74 (35%)
Frame = +2
Query: 704 TPPGXXXXNXGFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXV 883
+PP P P PP S G P PP G PP GSP
Sbjct: 275 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP--PPRAGSP-PPPPPPRGSPPTG 331
Query: 884 KDPPPKRAWGENPP 925
PPP +A G PP
Sbjct: 332 SLPPP-QAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/74 (32%), Positives = 26/74 (35%)
Frame = +2
Query: 704 TPPGXXXXNXGFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXV 883
+PP P P PP S G P PP G PP GSP
Sbjct: 260 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP--PPRAGSP-PPPPPPRGSPPTG 316
Query: 884 KDPPPKRAWGENPP 925
PPP +A G PP
Sbjct: 317 SLPPP-QAGGSPPP 329
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +2
Query: 812 PFXPPGEGXGLXXNXPPXGSPXXVKDPPPKRAWGENPPLTPP 937
P P E L PP SP +P PK PP+TPP
Sbjct: 625 PVDPVTEASPLNPQPPPPPSPSPEPEPEPK------PPVTPP 660
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 821 PPGEGXGLXXNXPPXGSPXXVKDPPPKRAWGENPPLTPPL 940
PP G+ PP G P PPP+ G PP PP+
Sbjct: 166 PPAPAPGVYM--PPPGMPGAY--PPPRMPIGHGPPGGPPM 201
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 821 PPGEGXGLXXNXPPXGSPXXVKDPPPKRAWGENPPLTPPL 940
PP G+ PP G P PPP+ G PP PP+
Sbjct: 166 PPAPAPGVYM--PPPGMPGAY--PPPRMPIGHGPPGGPPM 201
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 560 FPPXLGXXLFPPXGGVXPXPPPXXP 486
FPP G FPP P PPP P
Sbjct: 426 FPPHHGHHHFPPFWPPCPPPPPFWP 450
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = -1
Query: 489 AGXXGXVGGEXXXXPIXXPXXPGGXXIFLXPEXP-PPPXPGPXXXXGXP 346
AG G G + P P PG P P PP PGP G P
Sbjct: 180 AGPPGPPGPDGNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQP 228
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = -1
Query: 555 PXFGXXPFSPLXGGXXXXPPXXAGXXGXVGGEXXXXPIXXPXXPGGXXIF-LXPEXPPPP 379
P P G PP AG G G P PG + P PPP
Sbjct: 88 PEVNPAPNLQCEGCCLPGPPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPC 147
Query: 378 XPGPXXXXGXP 346
P P G P
Sbjct: 148 KPCPQGPPGPP 158
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = -1
Query: 555 PXFGXXPFSPLXGGXXXXPPXXAGXXGXVGGEXXXXPIXXPXXPGGXXIF-LXPEXPPPP 379
P P G PP AG G G P PG + P PPP
Sbjct: 83 PEVNPAPNLQCEGCCLPGPPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPC 142
Query: 378 XPGPXXXXGXP 346
P P G P
Sbjct: 143 KPCPQGPPGPP 153
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = -1
Query: 555 PXFGXXPFSPLXGGXXXXPPXXAGXXGXVGGEXXXXPIXXPXXPGGXXIF-LXPEXPPPP 379
P P G PP AG G G P PG + P PPP
Sbjct: 83 PEVNPAPNLQCEGCCLPGPPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPC 142
Query: 378 XPGPXXXXGXP 346
P P G P
Sbjct: 143 KPCPQGPPGPP 153
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +2
Query: 707 PPGXXXXNXGFXPXXXPPRXPPPFSXXXXXTGXLXPFXPPGEGXGLXXNXPPXGSPXXVK 886
PP + P PP PPP + TG P PP PP SP +
Sbjct: 1342 PPPPPPPSDDLTPVPPPP--PPPPTMSKAPTGVPLPVPPP----------PPLFSPSMIL 1389
Query: 887 DPPP 898
PPP
Sbjct: 1390 PPPP 1393
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 501 PPXXAGXXGXVGGEXXXXPIXXPXXPGGXXIFLXPEXPPPPXPGPXXXXG 352
PP G G G P P G + P+ PP P PGP G
Sbjct: 229 PPGYPGRPGETGDHGKTIAGEAPPGPPGRQGEMGPQGPPGP-PGPRGKDG 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,350,041
Number of Sequences: 27780
Number of extensions: 216580
Number of successful extensions: 1451
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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